Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25752 311 / 6e-107 ATRBL11 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) AT5G25640 110 / 3e-30 Rhomboid-related intramembrane serine protease family protein (.1) AT5G07250 56 / 1e-08 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 54 / 4e-08 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 53 / 8e-08 ATRBL5 RHOMBOID-like protein 5 (.1) AT1G63120 49 / 2e-06 ATRBL2 RHOMBOID-like 2 (.1) AT2G29050 49 / 2e-06 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 47 / 1e-05 ATRBL4 RHOMBOID-like protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011680 [exp] 470 / 2e-169 AT5G25752 333 / 1e-115 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) Lus10024497 [exp] 52 / 2e-07 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 51 / 4e-07 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10003971 [exp] 51 / 5e-07 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10023789 [exp] 50 / 6e-07 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10027436 [exp] 49 / 2e-06 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10005464 [exp] 47 / 6e-06 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10004965 [exp] 46 / 1e-05 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037300 [exp] 351 / 4e-122 AT5G25752 348 / 5e-121 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11, rhomboid-like protein 11 (.1) Potri.006G086300 [exp] 56 / 9e-09 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.012G139600 [exp] 52 / 1e-07 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.015G142000 [exp] 52 / 1e-07 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.001G241300 [exp] 51 / 3e-07 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 48 / 3e-06 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 48 / 3e-06 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 48 / 4e-06 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10022131 pacid=23146483 polypeptide=Lus10022131 locus=Lus10022131.g ID=Lus10022131.BGIv1.0 annot-version=v1.0 ATGCATTTGCAGTTGCAGCTCCACCACCAATACCCGCCATTGCCAAACCCATCTTACCCTCGACTATTTTTCCCCTCTACAGCTCGCAGCTTCTTCCCCA AGCACTTAGCCTTCACTGCTCCAAGACTCGCTCAACCCTTGTTTTCTCATTTACTCCCTTTCTCTTCCCATGCTCCGCTGTCTCGCTTCATTTGCCAGTC GAATGACACAGATATACCGAGGCAGCTTGAACTTGGGAAACCCGAAGGTAGAAGGAAACCAGAGAGAAAAGTGAATGGGATATTCTGGATTATTCTTGTA AACCTTGGTTTATTCGTAGCTGATCACTTCTTTCAGGTCCGAGCCATAAAATCTCTCTACTTGTATCACAATTGGCCTGCTTGGTATCAGTTTGTCACTG CAACGTTTTGCCACGCCAGTTGGGAACATCTTTCAAGCAACCTGTTCTTCCTCTACATATTTGGGAAGCTTGTTGAAGAAGAAGAAGGAACTTTTGGTCT GTGGTTTTCATACATTCTTACTGGTGTTGGGGCCAATCTTGTTTCGTGGTTAGTTTTGCCTAGGAATTCTGTATCAGTTGGAGCTTCAGGTGCTGTTTTC GGATTGTTCGCTATTAGTGTACTTGTAAAGTTAACGTGGGACTGGAGAAAGATCATTGAAGTGCTGATATTGGGCCAATTTGTAGTGGAGAAGGTAATGG AGGCAGCTCAATCTTCAGCAGCAATGTCAGGAAGCTTAGGTGGAGCAGGTCAGGGTGTAAACCATATTGCACATCTCTCCGGTGCTCTAATTGGCGTCAT TCTCGTCTGGCTCGTCAGCAAAATCCCTGCTGCTCCAACGGATGATTGA
AA sequence Show only first row Show all	>Lus10022131 pacid=23146483 polypeptide=Lus10022131 locus=Lus10022131.g ID=Lus10022131.BGIv1.0 annot-version=v1.0 MHLQLQLHHQYPPLPNPSYPRLFFPSTARSFFPKHLAFTAPRLAQPLFSHLLPFSSHAPLSRFICQSNDTDIPRQLELGKPEGRRKPERKVNGIFWIILV NLGLFVADHFFQVRAIKSLYLYHNWPAWYQFVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGTFGLWFSYILTGVGANLVSWLVLPRNSVSVGASGAVF GLFAISVLVKLTWDWRKIIEVLILGQFVVEKVMEAAQSSAAMSGSLGGAGQGVNHIAHLSGALIGVILVWLVSKIPAAPTDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10022131 [exp]	0	1
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	4.2	0.7461
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	5.3	0.7247
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	10.8	0.7442
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	12.0	0.7153
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	12.4	0.7573
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	16.3	0.7467
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	21.8	0.7398
AT5G18130			unknown protein		Lus10005702 [exp]	28.5	0.7229
AT1G18010			Major facilitator superfamily ...		Lus10043371 [exp]	30.3	0.7299
AT1G57540			unknown protein		Lus10029982 [exp]	33.4	0.6669

Compare expression of checked genes

Lus10022131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.