Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32720 362 / 4e-122 ATLA1 La protein 1 (.1.2) AT1G79880 223 / 2e-68 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT5G46250 69 / 1e-12 RNA-binding protein (.1.2.3) AT2G43970 62 / 4e-10 RNA-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011685 [exp] 719 / 0 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10038624 [exp] 421 / 4e-144 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10038494 [exp] 74 / 3e-14 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 74 / 5e-14 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10025608 [exp] 63 / 3e-10 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 61 / 8e-10 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10012058 [exp] 54 / 2e-07 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10030327 [exp] 43 / 0.0006 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241800 [exp] 400 / 3e-136 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.018G037900 [exp] 392 / 4e-133 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.011G080700 [exp] 62 / 3e-10 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.017G007400 [exp] 62 / 4e-10 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.009G106500 [exp] 61 / 9e-10 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.007G144800 [exp] 61 / 1e-09 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.004G144700 [exp] 57 / 1e-08 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.005G109400 [exp] 42 / 0.0007 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF08777 [flax] [poplar] RRM_3 RNA binding motif CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10022135 pacid=23146502 polypeptide=Lus10022135 locus=Lus10022135.g ID=Lus10022135.BGIv1.0 annot-version=v1.0 ATGGCGACGACTCAATCCTTAGACGATAACATCGCCAAGGAAGTCCTTCGACAGGTGGAGTTTTACTTCAGCGACAGCAATCTCCCCCGGGACAAGTTCT TGACAGAAACGGTTACATCCAGCGAAGATGGCATGGTTAGCCTGGCTCTTATATGCTCGTTCGCGAAAATGAGGGGCTATTTGAAATTGGGGGAGGTCAA GCCGGATGACGTTACTGAGGATACTTTGAAGGCTGTGGCTAAAGTTCTTGCAAAGTCTGCTTCTGTTAAGCTTTCTGAAGATGGAAAGAAAGTTGGTAGA GTTTCTCCACTAATGAAACCAGAAGAGCTAGTGGAGCAATTGGATGGAAGGACTGTTGCTGTGTCCCCGTTGCCTTTCGATGCTAATCGCGAAGCAGTGC GGTCATTTTTCAGTCAGTATGGCACGGTCAATAGTGTTAGGTTGCCTAACCATTTTGCTGACAGAAAGGTGTTCAGTGGTACTGCTTTGGTCGAGTTTTC AACTGATGACGAGGCTGAGAAGGTTCTTGGTCAAATCCTGACCTTTGCGGGCACAGAGCTAGAACTGAAACCAAAGAAGGAATTTGATGTAGAAAGAGCT CAGAAGGCAGAGGAGCACAAAGCTGCCAATCCTCAATGGAAAGAAGACCATCAGAATAAGGCGAATCCAAAAGACAACTATCCAAAGGGTTTGATTGTTG CTTTTAAATTGAAGAGCTTATCAACCGGGGAGGAAGCAGAACAGAATATAAATAGGGTATCTGTTAATATTGATGGGACTAATACTAAACCAGAGGAATC TTTACCTTCTGAAGAAAGCCAGGAGAAGGCACCAGAAGATGCTAATAACAAGGAAGAAACTGCTGCTATGGATACTGAGAATGTGCAAGAGGTTGATAAA GAAAAGGAAAGTGAAGGCAAACAAACCAAGCTCGAGGAAGAGCCGTCTAAAGATGCTGTTGAAAAGAAGGGTAAATTTGACCTTGCTGCCTGCAAGGAGG ATAAGAATGTTGTGCTGCGTGAGGATCTGAAGGTCGTCTTTGCTAAATTTGGCAATGTCAAGATTGGAGAGGATTCAGGATTTGTCAGATTTGAGAACCC TGAAGGAGCTCAGAAGGCTCGTGCTGCTGCAGTATTAGCGACAGAAGGGGGACTGATTGTTAAAAACTTTGTTGCCACTTTAGAACCAGTAACTGGCGAG GCTGAAAAGGACTACTGGAACCGGCTCCGTGACAATCAAGATAGACACAAAGATAGCCGAGGGAGGGGAGAAAGGTTCCATAGTAGAGGTGGTGGCGGTA AGAACCATCGTCGGAGGGACAATGATTCGGGCAGAGGCCGTGGTCGTAACAAGTTTCAGAAGGTTGGAGCATGA
AA sequence Show only first row Show all	>Lus10022135 pacid=23146502 polypeptide=Lus10022135 locus=Lus10022135.g ID=Lus10022135.BGIv1.0 annot-version=v1.0 MATTQSLDDNIAKEVLRQVEFYFSDSNLPRDKFLTETVTSSEDGMVSLALICSFAKMRGYLKLGEVKPDDVTEDTLKAVAKVLAKSASVKLSEDGKKVGR VSPLMKPEELVEQLDGRTVAVSPLPFDANREAVRSFFSQYGTVNSVRLPNHFADRKVFSGTALVEFSTDDEAEKVLGQILTFAGTELELKPKKEFDVERA QKAEEHKAANPQWKEDHQNKANPKDNYPKGLIVAFKLKSLSTGEEAEQNINRVSVNIDGTNTKPEESLPSEESQEKAPEDANNKEETAAMDTENVQEVDK EKESEGKQTKLEEEPSKDAVEKKGKFDLAACKEDKNVVLREDLKVVFAKFGNVKIGEDSGFVRFENPEGAQKARAAAVLATEGGLIVKNFVATLEPVTGE AEKDYWNRLRDNQDRHKDSRGRGERFHSRGGGGKNHRRRDNDSGRGRGRNKFQKVGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10022135 [exp]	0	1
AT5G42150			Glutathione S-transferase fami...		Lus10017275 [exp]	4.2	0.9205
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	7.2	0.9382
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10038826 [exp]	9.9	0.9080
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	12.2	0.9379
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	14.5	0.9282
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	15.2	0.9303
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	16.6	0.9202
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	17.9	0.9208
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	19.0	0.9159
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	19.8	0.9321

Compare expression of checked genes

Lus10022135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.