Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11520 762 / 0 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT5G19550 717 / 0 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT1G62800 622 / 0 ASP4 aspartate aminotransferase 4 (.1.2) AT4G31990 468 / 3e-163 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT2G30970 429 / 5e-148 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043222 [exp] 729 / 0 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 725 / 0 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 479 / 2e-167 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10029796 [exp] 419 / 3e-144 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 419 / 4e-144 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 352 / 6e-118 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10001753 [exp] 332 / 4e-110 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10000181 [exp] 213 / 2e-64 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2) Lus10010243 [exp] 43 / 0.0005 AT4G37770 570 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241600 [exp] 776 / 0 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.018G082500 [exp] 729 / 0 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241500 [exp] 648 / 0 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G260200 [exp] 482 / 3e-168 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 480 / 8e-168 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.014G143300 [exp] 417 / 2e-143 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 401 / 2e-137 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10022137 pacid=23146490 polypeptide=Lus10022137 locus=Lus10022137.g ID=Lus10022137.BGIv1.0 annot-version=v1.0 ATGAGTTCCGAATCGTACACTTGTGCACCTTCTTATTCTTCTTCAGCCTCGTTTCCGGCCAGTGATCGGCGACTAAGTGTTCTGGCGAGACACCTCGGGG TTCAAAATGTTCACACGTCGTCCCCAATCTTTGCTTCTCCAACTTCTTCTGGCTCGCAAGGAAATTCTGTCTTCTCCCACATCTCTCGCGCTCCCGAAGA CTCAATTCTCGGGGTGACGGTAGCATATAACAAAGATCCGAGTCCTGTGAAGCTGAATTTGGGAGTCGGCGCTTACCGAACTGAGGAGGGTAAGCCTCTT GTTCTGAATGTCGTGCGAAAAGCCGAGCAGATGCTTGTTAATGACAGGTCTCGAGTTAAGGAGTATATTCCAATTGTAGGATTGGCTGACTTCAATAAAT TGAGTGCAAAATTGATGTTTGGAGCTGATAGCTCAGTTATTCGTGAGAATCGGATCACCACAGTTCAATGCTTGTCTGGAACTGGCTCGCTACGGGTTGG AGGTGAATTCCTGGCCAGGCATTATCACCAAAAGACGATATACATTCCCTTGCCAACTTGGGGAAACCACCCTAAAGTCTTCACCTTAGCAGGGTTATCA GTTAAGACATACCGTTATTATGATCCAGCAACACGTGGACTGAACTTCCAAGGCATGATGCAAGATCTTGGGTCTGCCCCTTCTGGAGCTGTTGTACTTC TTCATGCCTGTGCTCACAACCCAACGGGTGTTGATCCAACTCCTCAGCAATGGGAGCAAATCAGGCACTTAATGCGATCAAAAGCACTGATGCCGTTCTT CGACAGTGCCTATCAGGGCTTTGCTAGCGGAAGTTTGGATACAGATGCGCAGTCTGTGCGCATGTTTGCCGCTGATGGAGGAGAGCTTCTACTAGCTCAA AGTTACGCAAAGAACATGGGCCTCTATGGGGAGCGTGTTGGTGCCTTGAGCATTGTGTGCAAAGATGCTGATGTTGCGGGCAAAGTTGAGAGCCAGCTGA AGCTCGTAATAAGGCCCATGTACTCGAGTCCACCTATTCATGGTGCAGCAATTGTGGCTGCCATCCTAAAAGACGAAAACTTGTATAATGAATGGACCAC GGAACTGAAGGAAATGGCTGACAGGATAATCAGCATGCGGAAGCAGCTCTTTGATGCCCTCCGTTCCAGAGGTACGCCTGGTGACTGGAGCCATATTCTT AAACAAATTGGAATGTTCACGTTCACGGGCCTCAATTCCGAGCAGGTGGCCTTCATGACTAGGGAGTACCACATCTACATGACATCTGACGGGAGGATTA GCATGGCGGGATTGAGCTCCAAGACAGTTCCTCACCTTGCTGATGCAATCCATTCAGCTGTTACTACTACTGGCATGAAGTAG
AA sequence Show only first row Show all	>Lus10022137 pacid=23146490 polypeptide=Lus10022137 locus=Lus10022137.g ID=Lus10022137.BGIv1.0 annot-version=v1.0 MSSESYTCAPSYSSSASFPASDRRLSVLARHLGVQNVHTSSPIFASPTSSGSQGNSVFSHISRAPEDSILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPL VLNVVRKAEQMLVNDRSRVKEYIPIVGLADFNKLSAKLMFGADSSVIRENRITTVQCLSGTGSLRVGGEFLARHYHQKTIYIPLPTWGNHPKVFTLAGLS VKTYRYYDPATRGLNFQGMMQDLGSAPSGAVVLLHACAHNPTGVDPTPQQWEQIRHLMRSKALMPFFDSAYQGFASGSLDTDAQSVRMFAADGGELLLAQ SYAKNMGLYGERVGALSIVCKDADVAGKVESQLKLVIRPMYSSPPIHGAAIVAAILKDENLYNEWTTELKEMADRIISMRKQLFDALRSRGTPGDWSHIL KQIGMFTFTGLNSEQVAFMTREYHIYMTSDGRISMAGLSSKTVPHLADAIHSAVTTTGMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	0	1
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	2.2	0.8695
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10032514 [exp]	4.9	0.8539
AT2G33700			Protein phosphatase 2C family ...		Lus10013213 [exp]	6.0	0.8487
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	7.7	0.8533
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	10.5	0.8654
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	10.9	0.8217
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	12.5	0.8250
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	15.4	0.8247
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	16.2	0.8306
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	18.0	0.8122

Compare expression of checked genes

Lus10022137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.