Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32750 387 / 6e-134 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024698 [exp] 521 / 0 AT4G32750 419 / 5e-149 unknown protein Lus10038629 [exp] 92 / 2e-21 ND / Lus10012636 [exp] 78 / 1e-17 ND / Lus10017922 [exp] 59 / 6e-11 ND / Lus10003746 [exp] 50 / 2e-08 ND / Lus10023022 [exp] 40 / 0.0003 AT3G62770 46 / 7e-07 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10016867 [exp] 39 / 0.0007 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038600 [exp] 409 / 1e-142 AT4G32750 360 / 8e-126 unknown protein Potri.006G241200 [exp] 401 / 2e-139 AT4G32750 362 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022138 pacid=23146460 polypeptide=Lus10022138 locus=Lus10022138.g ID=Lus10022138.BGIv1.0 annot-version=v1.0 ATGGCAATCATCAGTGACGCGCTGCGGCAAGCGTTCATGCCGAAACAAGAGTACGAGAGCTTGCGGGAGGAAGATAAGGCATGGTCGAAGCTACAGAAAC CTCTCTTCGCTTCTGCGGTGGCGTTCGTCTGCCTTGCTATCCTTGTCTGCACGGTAGTTAGTTTGAGGATTGTGTTCCCAGCCAATGGAATGAGGCGGCC TTTTTGTTCTGACCGGCGGCTGCAGCCTCTGTCCATAAACGTCAAGGGAGGAGGTGACTCGGATCTGTTTCCCGGTGCATTCTATCTGACGGATCAGGAG ATTGCTGACTATTACTGGATGGTGCTCTTTATCCCGTCGGCCATTCTTTTCTGCACTTCATTTCCTTATCTGGCATCTGGCAACTGTATCTCTTATTTCA TTGACATTGATAATGATGATGCAGGGATTACTGTTGCTTATTCTGCTCCAACTAGGCATAGTTGCTTAAAGGTGGTTGAAAATAATTACTGTGCTTCCAG AAGAGGTGGTGTCCGGTGCCTGTCAATCCTAAATGTTGTATTTGCGGGCATATTTGGTCTCCTTGCTGTATTCCTTGGTTCAAGCCTCTTGACATTAGGG AGTAGTTGCTCTGTGCCCTTGTTCTGGTGCTATGAGATTGCTACATGGGGACTGGTGATTCTATATGGGGGAACTGCATTCTTCCTGAGAAGAAAAGCTG CTGTAATCCTTGACGGAGGAGATCATGGTAGCAGGAACCTTGGCCTGGAAATGCTGGAAGCAAACACATTGATGGTCACACCAGAGGTGGAAAGGCGAGT TAATGAAGGTTTTAAGACTTGGACAGGATCATCTGTCCTAGCTTCTTCTGATGAAGAACCGGACAATTTCGTTGAAGCACCTGAGCCAATAAATGCATCT TTGAATAGGGAGAGGTCGGGCCGCTATCGCCCGTCGTCCTTCGCCCCGCTGTTTCCTTCCTTTGTGACAGATCCGGTCCAAATTCATCGTCGCTGCCGCC GCTTCTTTCTTCCGGTAACAGATCCGGTCCCGCCGCCGCCGTTTCTTTCCTCCGCTCACAGATCCAGTTCCAGCCGCTGTTACGATTTGTTCAATTTACT GAATGCAGCTATGAGCGATACAGGAAATGATGGCGATGGTACTGTGCAGTGGGAAAGTGATGATGATGAAGAAGAGGAGATGGATTACAATAAATGTTTT GAGAATAGAGTTCTGTCTGAGACACGTGAAGCCGCTGATGATGCGGCAAAAGACATCGCATTGAGTTTAGGGTTTGAAGTGGTTAAGGGTTCATACAAAA AAACCTGGTAA
AA sequence Show only first row Show all	>Lus10022138 pacid=23146460 polypeptide=Lus10022138 locus=Lus10022138.g ID=Lus10022138.BGIv1.0 annot-version=v1.0 MAIISDALRQAFMPKQEYESLREEDKAWSKLQKPLFASAVAFVCLAILVCTVVSLRIVFPANGMRRPFCSDRRLQPLSINVKGGGDSDLFPGAFYLTDQE IADYYWMVLFIPSAILFCTSFPYLASGNCISYFIDIDNDDAGITVAYSAPTRHSCLKVVENNYCASRRGGVRCLSILNVVFAGIFGLLAVFLGSSLLTLG SSCSVPLFWCYEIATWGLVILYGGTAFFLRRKAAVILDGGDHGSRNLGLEMLEANTLMVTPEVERRVNEGFKTWTGSSVLASSDEEPDNFVEAPEPINAS LNRERSGRYRPSSFAPLFPSFVTDPVQIHRRCRRFFLPVTDPVPPPPFLSSAHRSSSSRCYDLFNLLNAAMSDTGNDGDGTVQWESDDDEEEEMDYNKCF ENRVLSETREAADDAAKDIALSLGFEVVKGSYKKTW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32750			unknown protein		Lus10022138 [exp]	0	1
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	2.8	0.9347
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	3.5	0.9276
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	8.2	0.9369
AT4G20880			ethylene-responsive nuclear pr...		Lus10023347 [exp]	10.2	0.9085
AT2G45720			ARM repeat superfamily protein...		Lus10041369 [exp]	12.8	0.8966
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	17.7	0.9144
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	18.1	0.9294
AT2G37900			Major facilitator superfamily ...		Lus10024340 [exp]	20.6	0.9137
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10040032 [exp]	22.9	0.8808
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	24.8	0.9028

Compare expression of checked genes

Lus10022138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.