Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32760 454 / 3e-151 ENTH/VHS/GAT family protein (.1.2) AT3G08790 367 / 5e-118 ENTH/VHS/GAT family protein (.1) AT1G21380 306 / 4e-96 Target of Myb protein 1 (.1) AT1G76970 298 / 1e-93 Target of Myb protein 1 (.1) AT5G01760 228 / 2e-66 ENTH/VHS/GAT family protein (.1) AT5G63640 191 / 1e-53 ENTH/VHS/GAT family protein (.1) AT2G38410 157 / 2e-40 ENTH/VHS/GAT family protein (.1) AT5G16880 117 / 5e-28 Target of Myb protein 1 (.1.2.3) AT1G06210 81 / 4e-16 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011689 [exp] 488 / 3e-164 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10018948 [exp] 296 / 5e-93 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10029739 [exp] 294 / 2e-91 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10028649 [exp] 297 / 5e-90 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10042770 [exp] 290 / 6e-90 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10022753 [exp] 261 / 2e-77 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 256 / 1e-75 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 255 / 9e-75 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 182 / 2e-50 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039100 [exp] 580 / 0 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 554 / 0 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.002G075500 [exp] 313 / 2e-98 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.005G184900 [exp] 308 / 7e-97 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 271 / 1e-80 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 267 / 1e-79 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 190 / 1e-53 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 190 / 1e-53 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 185 / 1e-51 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 125 / 7e-31 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10022140 pacid=23146472 polypeptide=Lus10022140 locus=Lus10022140.g ID=Lus10022140.BGIv1.0 annot-version=v1.0 ATGGTGAACCCTATGGTTGAAAGGGCTACCAGTGACATGCTGATCGGCCCTGATTGGGCTATGAATATCGAGATCTGCGACATGTGCAACCACGACCCTG GACAAGCAAAAGAAGTCGTTAAAGGCATAAAGAAGCGTTTGGGGAGTAAGAATTCCAAAGTTCAACTTCTTGCTTTGACATTGTTGGAGACTATCGTAAA GAATTGTGGAGACATCGTCCACATGCAAGTGGCAGAAAAGGGTTTGCTCCATGACATGGTGAAAATAGCAAGGAAAAAGCCGGACTTGCATGTAAAGGAG AAGATTTTGTCCTTAATTGATACATGGCAAGAAGCTTTTGGAGGGCCTAGAGCAAGATATCCTCAATATTATGCAGCGTACCAGGAACTCTTGCGCGCTG GGGCAGTGTTTCCTCAGAGAACAGAGCAGTTAGCACCGGTTCTCACACCTCCACAAACACAACCGCTGGCGTCTTACCCCCAGAAGCTAAGAAATCCTGA GTTCAGACCAGAGCCAGCTGAATCTTCTGAGTCCGAGTTCCCAACCTTAAGCTTGTCAGAAATCCAAAATGCACGGGGTCTGATGGATGTCCTTTCAGAA ATGCTTAATGCTTTAGATCCAGGAAACAAAGAGGGGCTGAGGCAGGAAGTTATTGTTGACTTAGTGGAACAATGTCGGACGTACAAACAGAGAGTGGTGC ACCTTGTTAATTCAACTGCGGATGAATCTCTACTGTGTCAAGGATTGGCTCTGAATGATGACTTACAACGTGTTCTAGCCAAACATGAGGGCATTGCTTC TGGAACTGCTGCTGCAAAAGATAAGCCGAAGTCAAATCCTCAACCTAGTGGGAGTCTCGTAGACGTAGATGGCCCTCTAGTTGATGTTGGACATTCCAGC AAACAGCCTAATCAAGAATCTCCTTCAAGTTCAGGTGCAGCCAATCAGCCATTTAATCAGCTATTGCTTACAGCACCTCCGGCAGGCAACGGTCCAGCCG GTCCGTCAGCAGCCAACCCTAAGATGGATCTATTAAGCGGTGATGACTTCAGCTCACCAAAGGCTGCTGACACTTCACTTGCTCTTGTTCCTGTTGGAGA AACACAGCCAACTGCTTCTCCTTCTCAGCAGAATGCACTTGTTCTATTTGACATGTTTTCGGACAATCAACCAAATGGTGTGAACAATCCTCCAAATGGT GTCACTGTGCAGCAGCAGCAGCCTACCCATCTGGATGGTCAGAATAACCCCATGGCCCAACAATTCCAACAACAACCAAATTTCCAATCTCTTGATTCTG GGGTGTACCCTAATGGAACAACATCAAATATGGGGTCACCACGATATGAGCAGTCACCATTTATGCAAGGTTCTGTTCCCGCCTGGAATGGGCAACTCGT CCAACAACAACAGCCAGCCTCTCCAGTTTATGGTTCACAAAGTGGGGGGTCACTACCTCCACCACCATGGGAGGCTCAGGCGGGAGCAGGAGATGGTATG GGAAGTCCGGTGGGAGGATCTCAATACCCTTCCCAGCCAATGGCAGTAACTCAAGTTGTGGTGACCCACAGTCAACCGATGGGAAGCCCTATGGGAACAA TGGGAAACGACCCCGGTGTGGGAATCTACATTCAGCCCGGTTCAAACGGCTCACCTATGTCAGCAGCTGGGCAGGCCAATCCATATTTTGGAATGCAGCC ACAGGGTGGAGGGCAGTACATGGGGATGGGGGTGGGAATGGGAATGGTCCCGCAACAAATGCAAGCAGCTGGTGGTTATATGAATCCATCCATGTATCTT CAACAGCAACAACAGCAGCAGCAGCAGCAGGCGATGATGTATAACAACCAAATGCAAGCAGCAGCAGGATATGGTGGTGGTATGTACGGACAGCAGCAGC ATCAGCTGACTCCGCAGCAGCAGCGCTACTTGGAGCAGAAAATGTACGCAATGTCAATGAGAGATGACAGCAGCAGTTTGAGAAGCTCTACAGGTGGTGG TGGTTATGGGATGCCGTCAAATTCTGTGTCTTTAGTCCCATCTGCAAAACCCGCAAAGCCAGAAGATAAGCTGTTTGGTGACCTTGTGGACCTAACTAAG TTCAAGCCAGGGAAAACCTAA
AA sequence Show only first row Show all	>Lus10022140 pacid=23146472 polypeptide=Lus10022140 locus=Lus10022140.g ID=Lus10022140.BGIv1.0 annot-version=v1.0 MVNPMVERATSDMLIGPDWAMNIEICDMCNHDPGQAKEVVKGIKKRLGSKNSKVQLLALTLLETIVKNCGDIVHMQVAEKGLLHDMVKIARKKPDLHVKE KILSLIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRTEQLAPVLTPPQTQPLASYPQKLRNPEFRPEPAESSESEFPTLSLSEIQNARGLMDVLSE MLNALDPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRVLAKHEGIASGTAAAKDKPKSNPQPSGSLVDVDGPLVDVGHSS KQPNQESPSSSGAANQPFNQLLLTAPPAGNGPAGPSAANPKMDLLSGDDFSSPKAADTSLALVPVGETQPTASPSQQNALVLFDMFSDNQPNGVNNPPNG VTVQQQQPTHLDGQNNPMAQQFQQQPNFQSLDSGVYPNGTTSNMGSPRYEQSPFMQGSVPAWNGQLVQQQQPASPVYGSQSGGSLPPPPWEAQAGAGDGM GSPVGGSQYPSQPMAVTQVVVTHSQPMGSPMGTMGNDPGVGIYIQPGSNGSPMSAAGQANPYFGMQPQGGGQYMGMGVGMGMVPQQMQAAGGYMNPSMYL QQQQQQQQQQAMMYNNQMQAAAGYGGGMYGQQQHQLTPQQQRYLEQKMYAMSMRDDSSSLRSSTGGGGYGMPSNSVSLVPSAKPAKPEDKLFGDLVDLTK FKPGKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	2.0	0.9232
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10007433 [exp]	4.2	0.8874
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	4.9	0.9123
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	5.2	0.9120
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	7.4	0.8972
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	8.7	0.8660
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	11.1	0.8980
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	11.5	0.8607
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	11.8	0.8766
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	12.4	0.8817

Compare expression of checked genes

Lus10022140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.