Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11560 143 / 6e-41 catalytics (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011690 [exp] 180 / 7e-54 AT5G11560 1371 / 0.0 catalytics (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039800 [exp] 156 / 2e-45 AT5G11560 1419 / 0.0 catalytics (.1) Potri.006G240300 [exp] 147 / 4e-42 AT5G11560 1387 / 0.0 catalytics (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022143 pacid=23146468 polypeptide=Lus10022143 locus=Lus10022143.g ID=Lus10022143.BGIv1.0 annot-version=v1.0 ATGGGAACCACGCTTAGGGTTTTCCTTCTCCTCCTCTCGCTTTTATCCATTACAGCTCCTGCCTTCTCTCTTTACGAAGATCAAGCTGGCCTCGCCGACT GGCATCAGAAGTACATAGGCAAAGTGAAGGATGCTGTGTTTCACACGCAAAAAACTGGTAGAAAGCGAGTCGTGGTTTCCACTGAAGAGCATGTTATTGC TTCTCTAGATCTTAGACATGGCGAGATTTTCTGGAGACATGTTCTGGGAGCTAATGATGCCGTTGATGGAATAGATATCGCAATGGGTAAATGTGAGTGT TCCGTGGTGATTGATGTGTTCGTTCTCGTGCTTCCTTTGGATGCTTAA
AA sequence Show only first row Show all	>Lus10022143 pacid=23146468 polypeptide=Lus10022143 locus=Lus10022143.g ID=Lus10022143.BGIv1.0 annot-version=v1.0 MGTTLRVFLLLLSLLSITAPAFSLYEDQAGLADWHQKYIGKVKDAVFHTQKTGRKRVVVSTEEHVIASLDLRHGEIFWRHVLGANDAVDGIDIAMGKCEC SVVIDVFVLVLPLDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11560			catalytics (.1)		Lus10022143 [exp]	0	1
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	1.0	0.9623
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	3.7	0.9553
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	4.5	0.9462
AT5G11560			catalytics (.1)		Lus10011690 [exp]	4.5	0.9406
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10031441 [exp]	6.7	0.9119
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	7.5	0.9451
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	7.5	0.9477
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	7.7	0.9320
AT5G11560			catalytics (.1)		Lus10022144 [exp]	7.7	0.9280
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	8.9	0.9303

Compare expression of checked genes

Lus10022143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.