Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 78 / 5e-18 F-box family protein (.1) AT2G35280 71 / 4e-16 F-box family protein (.1) AT1G74875 64 / 5e-13 unknown protein AT3G30430 57 / 3e-11 F-box family protein (.1) AT1G14800 44 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) AT1G36030 39 / 0.0001 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030128 [exp] 193 / 1e-63 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10005844 [exp] 190 / 1e-63 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10037978 [exp] 184 / 9e-60 AT1G67623 82 / 3e-18 F-box family protein (.1) Lus10038709 [exp] 181 / 2e-58 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10023768 [exp] 142 / 8e-45 AT1G74875 66 / 6e-14 unknown protein Lus10038720 [exp] 119 / 3e-35 ND 41 / 8e-05 Lus10006434 [exp] 78 / 4e-18 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 68 / 2e-14 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10006418 [exp] 50 / 4e-08 AT1G67340 492 / 1e-174 HCP-like superfamily protein with MYND-type zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 131 / 6e-39 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 124 / 3e-36 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.015G096200 [exp] 52 / 1e-08 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.012G097600 [exp] 49 / 2e-07 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022147 pacid=23156280 polypeptide=Lus10022147 locus=Lus10022147.g ID=Lus10022147.BGIv1.0 annot-version=v1.0 ATGGCCCCACCAATCTTGTCCCTTCGCCTTCTCCCTAGAGACATCCTCGTCGACGTCCTTGCCAGGGTAGCTATCACATCCTCCGCTGACCTCTTCAGCG CGAAATTGACATGCAAGGCCCTGTCAGACGCTTCAGCAGACGACTACGTATACCACCATGTCAAGATCTCCAAAATCCCACATAGGCCTTGGAAGATCAA CCACCAAACCGTCCTCGATCGGTGCATAACCAGCGGTAACCCTGAGGCTCTATTCTGCCGAGGCATTGTCGAGTTCTTTGGTTTGCTTGAAATTCAGTCA GGCCTTGCCAATTTAATGTCTGCAGCCCAGTCGGGTCACCTGGAATCAATTTACGTTTGCGGCATCGTGTCGTTGTGCCTTGGCCAAGAATAA
AA sequence Show only first row Show all	>Lus10022147 pacid=23156280 polypeptide=Lus10022147 locus=Lus10022147.g ID=Lus10022147.BGIv1.0 annot-version=v1.0 MAPPILSLRLLPRDILVDVLARVAITSSADLFSAKLTCKALSDASADDYVYHHVKISKIPHRPWKINHQTVLDRCITSGNPEALFCRGIVEFFGLLEIQS GLANLMSAAQSGHLESIYVCGIVSLCLGQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	0	1
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	3.6	1.0000
					Lus10022145 [exp]	4.5	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10011845 [exp]	4.5	1.0000
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10012855 [exp]	4.7	1.0000
					Lus10014487 [exp]	5.1	1.0000
					Lus10011061 [exp]	5.7	1.0000
					Lus10011759 [exp]	6.2	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	6.9	1.0000
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10020662 [exp]	7.6	1.0000
AT1G08790			Protein of unknown function (D...		Lus10021997 [exp]	7.7	1.0000

Compare expression of checked genes

Lus10022147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.