Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025017 [exp] 165 / 3e-49 ND / Lus10012497 [exp] 165 / 4e-49 ND / Lus10012429 [exp] 159 / 1e-48 ND / Lus10007158 [exp] 163 / 3e-48 ND / Lus10011659 [exp] 156 / 2e-47 ND / Lus10006005 [exp] 95 / 4e-24 ND / Lus10022526 [exp] 69 / 4e-14 ND / Lus10022956 [exp] 63 / 2e-12 ND / Lus10000761 [exp] 48 / 1e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022149 pacid=23156276 polypeptide=Lus10022149 locus=Lus10022149.g ID=Lus10022149.BGIv1.0 annot-version=v1.0 ATGGGAGATTCCGGTTCTCCAAGCAAAAACTGCGTTCTCCCCGTGGCCATGAAGCTCTTCTACTCCAATCTTAGGTATAGTAGAGCTTTTCCTGGAACAA TCACTGTGATTGTGCTTGGAGAGCATCTCCGCCTATCGCCAAAAATCATGGCCTGCTTCATCAACATAAGCACTCGAGGGCTCATTATTCACGAGAACAA TGATATTTGGCAGAAAAACTTCGATCTCATGGCAGCTTTTCCTCTCATTATGGACCCTAGCTTACAAAGCATGCCACTTCCTGGAGAATTCCTCACCAGG TCCTACTCTCCGGATACCTTGCTTCCTCTGGATATCTTTATCATATGGTGTGCCGTCACCTCTCAACCACTCAGTCTTCCATACCTCATGATGCGTATTA AGGAAGCAAGCATGGACAGCTACTTAGGAAACCTGCCTTTTGGTTCTCAAATCACAACACTGCTCACCAGCATGGGGGTCGATCTCTATGGTCATAACAG CACTGCATCGATCTCCGGATTTGACCCATACGGTGTAACGTGA
AA sequence Show only first row Show all	>Lus10022149 pacid=23156276 polypeptide=Lus10022149 locus=Lus10022149.g ID=Lus10022149.BGIv1.0 annot-version=v1.0 MGDSGSPSKNCVLPVAMKLFYSNLRYSRAFPGTITVIVLGEHLRLSPKIMACFINISTRGLIIHENNDIWQKNFDLMAAFPLIMDPSLQSMPLPGEFLTR SYSPDTLLPLDIFIIWCAVTSQPLSLPYLMMRIKEASMDSYLGNLPFGSQITTLLTSMGVDLYGHNSTASISGFDPYGVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022149 [exp]	0	1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10003393 [exp]	9.2	0.7829
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	18.3	0.7665
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	19.5	0.7730
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Lus10038767 [exp]	21.8	0.7604
AT3G49490			unknown protein		Lus10032925 [exp]	22.2	0.7339
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	22.3	0.7623
					Lus10011659 [exp]	24.5	0.7153
AT4G39420			unknown protein		Lus10014010 [exp]	25.8	0.7564
AT2G27830			unknown protein		Lus10015082 [exp]	44.0	0.6669
AT5G42710			unknown protein		Lus10010806 [exp]	45.5	0.7557

Compare expression of checked genes

Lus10022149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.