Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30935 365 / 2e-121 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT2G03340 169 / 6e-46 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26640 164 / 2e-44 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 160 / 5e-43 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G07100 154 / 2e-42 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 156 / 2e-41 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G30250 153 / 3e-41 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G04880 152 / 2e-40 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G26440 144 / 5e-37 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G37260 140 / 8e-37 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036268 [exp] 967 / 0 AT4G30935 364 / 4e-121 WRKY DNA-binding protein 32 (.1) Lus10015377 [exp] 175 / 4e-48 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10026634 [exp] 167 / 6e-46 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10016595 [exp] 164 / 5e-44 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10012322 [exp] 161 / 5e-44 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10043167 [exp] 163 / 6e-44 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10030424 [exp] 162 / 6e-44 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10037131 [exp] 161 / 7e-44 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10032580 [exp] 158 / 6e-43 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107000 [exp] 478 / 6e-165 AT4G30935 373 / 1e-124 WRKY DNA-binding protein 32 (.1) Potri.006G184800 [exp] 468 / 5e-161 AT4G30935 347 / 2e-114 WRKY DNA-binding protein 32 (.1) Potri.006G264000 [exp] 191 / 2e-54 AT4G30935 171 / 1e-47 WRKY DNA-binding protein 32 (.1) Potri.019G123500 [exp] 171 / 4e-46 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.006G105300 [exp] 168 / 2e-45 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 167 / 6e-45 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 166 / 8e-45 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.011G087900 [exp] 166 / 1e-44 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 165 / 2e-44 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G153400 [exp] 164 / 6e-44 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10022150 pacid=23156281 polypeptide=Lus10022150 locus=Lus10022150.g ID=Lus10022150.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGCGAAAGGTTGGTCGTTCCCCAACCGCATCAAAACAACGAACCAAAGCAAGTGTCAACAGACCATGTAGACGTGATTTTCGATCGAGATG GAGATGAATCGGATGCAGTCGTCGTCGATAACGACAGCGGCGGCGGAGAAGAAGAGGATGGTGAAAATGACAAAGACGAGACGCAGCCCGAGCTGAGGAG GCTTACTCCCGAGGAGGATAGTGCCGAGCCGTTGAGCTCTATGCAACATGAGAAGCCGGGTAACCTAGATGTGACAGCTTCGGCACTAGTGTCCGAGAAC GATCAGTGTATAGGTGAGTTGTCCGGAGGTTACGATTTGTTGCAGGAACTTATTTGGAAAGTGATTGCGCGTGATCTCCCAGGTTCTTTGGGGAATTCGG CTTTGGAGACGCGTACGGAGGCTGGATTCGAGGAGCAAGTGGGGTTATCACAAAAAGAAGTTGCCGTGTGTATATCACCCAAAAATGCTAAAGCTGAGTC CGACAATCAGCTTCAGTTGTGGGTTTTTCCTGCTCCCCTGTCAGGATTGTCTCCAACTTCAGTTAGCCAACCAATATCATCCGTCCCGGATCCAACTGTA CCTGAACAAAGATTTCCTTTGTCGAAAGGTAGCACTCTTACTGTGCAAGAAGCAAATCAACAGATGCCCTCCTACATTAAAAAGCTAACCATGCCTGTCC TGAAAACACCAATTCCTGATGGTTACAATTGGCGAAAATATGGTCAGAAGCAAGTTAAGAGTCCTAATGGTTCTCGGAGCTACTACAGGTGCACTCATTC TGACTGTTGTGCCAAAAAGATAGAATGTTCTGATCAATCTGGCCATGTCATTGAAATTGTTAATAAAGGATTGCACAGCCATGATCTACCTCAGAAAAGC AATTCCAAAAGAGAAAGTAGGGTTGCAACTTCTGGTAGGCCTATTCCTAGTAGTATCATAGCAGAACATTCAGTTGTACCTCAAGAATCAGACCCAGTAC TGTCAGAACAACCTAAGCAACAAAAGACTATAGTTGCTGATGGGAATCGTTTAGACTCGTTTGCCTCTGATGAGAATAATGCTGCTCAAACTAACGAAGA ACACATTTGTGAACCAGAGACCAAAAAAAGGTTGAAAAAGGACAGCCTGGATTGCCCGGAGGCCCTCTTTAAGCCTGGGAAGAAGTCCAAATTTGTTGTA CATGCAGCTGGTGATGTTGGGATCTCAGGTGATGGATATAGATGGCGAAAGTATGGACAGAAGATGGTAAAAGGAAATGCTCATCCCAGAAACTATTACA GATGCACATCTGCCGGGTGCCCAGTCCGCAAGCACATCGAAACAGAGGCAGGCAACTCCAGCGTCGTCATCATAACATACAAAGGCATCCACGACCACGA CATGCCAGTGCCAAAGAAGCGGCACGGCCCACCTAGTGCTTCTCTGGTGGCTGCTGCAGCTGCAGCCGGTTCCACGAATGCAGTGCAGCAGCAAAAAAGC TCAATGAAATGGCCTGCCAGGAAGGAAGGTGAAATAACAAGTGAAACCACTCCAGATGCTAGAGGTGGTGACAAGGACAAAGTGATTGAATCAGCTCGAA CACTGCTAAGCATTGGCTTCGAAATCAAGCCTTTTTAA
AA sequence Show only first row Show all	>Lus10022150 pacid=23156281 polypeptide=Lus10022150 locus=Lus10022150.g ID=Lus10022150.BGIv1.0 annot-version=v1.0 MAESERLVVPQPHQNNEPKQVSTDHVDVIFDRDGDESDAVVVDNDSGGGEEEDGENDKDETQPELRRLTPEEDSAEPLSSMQHEKPGNLDVTASALVSEN DQCIGELSGGYDLLQELIWKVIARDLPGSLGNSALETRTEAGFEEQVGLSQKEVAVCISPKNAKAESDNQLQLWVFPAPLSGLSPTSVSQPISSVPDPTV PEQRFPLSKGSTLTVQEANQQMPSYIKKLTMPVLKTPIPDGYNWRKYGQKQVKSPNGSRSYYRCTHSDCCAKKIECSDQSGHVIEIVNKGLHSHDLPQKS NSKRESRVATSGRPIPSSIIAEHSVVPQESDPVLSEQPKQQKTIVADGNRLDSFASDENNAAQTNEEHICEPETKKRLKKDSLDCPEALFKPGKKSKFVV HAAGDVGISGDGYRWRKYGQKMVKGNAHPRNYYRCTSAGCPVRKHIETEAGNSSVVIITYKGIHDHDMPVPKKRHGPPSASLVAAAAAAGSTNAVQQQKS SMKWPARKEGEITSETTPDARGGDKDKVIESARTLLSIGFEIKPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	1.7	0.8874
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	6.5	0.8108
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10022741 [exp]	9.8	0.7598
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	11.5	0.8124
AT2G25920			unknown protein		Lus10001457 [exp]	11.7	0.7240
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	12.0	0.8178
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	12.7	0.7933
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	15.6	0.7808
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	16.4	0.8315
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10023983 [exp]	18.5	0.7896

Compare expression of checked genes

Lus10022150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.