Plant FIBer expression Database

Lus10022152 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30920 632 / 0 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
AT2G24200 619 / 0 Cytosol aminopeptidase family protein (.1.2.3)
AT4G30910 588 / 0 Cytosol aminopeptidase family protein (.1)
AT5G13940 82 / 2e-16 aminopeptidases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036266
[exp]
807 / 0 AT4G30920 773 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10035823
[exp]
621 / 0 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G184500
[exp]
662 / 0 AT4G30920 835 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Potri.018G106800
[exp]
660 / 0 AT4G30920 873 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0223 MACRO PF02789 Peptidase_M17_N Cytosol aminopeptidase family, N-terminal domain
CL0035 Peptidase_MH PF00883 Peptidase_M17 Cytosol aminopeptidase family, catalytic domain
Representative CDS sequence
>Lus10022152 pacid=23156284 polypeptide=Lus10022152 locus=Lus10022152.g ID=Lus10022152.BGIv1.0 annot-version=v1.0
ATGGCGCACTCAGTTTCTAGTTTCACTCTCGGCCTCACTCAGCCCAACTCGACCCAACTCCCCAAGATCGTCTTCGCTGCGAAAGAGATTGATGCGGTTG
AATGGAAAGGAGATTTACTTGCGGTTGGTGTCACTGAGAAGGACATGGCTAAGGACGAGACCTCAAAGTTTGAGAACTCACTTCTGAAGAAGATCGATCG
TCAATTGAGTGGTCTCTTAAGTGAAGCATCGTCTGAGGAGGATTTCTCAGGGAAAGCTGGCCAATCAATTGTTCTTAGACTTCCTGGTCTGAGCTCCAAA
AGGATAGGCTTGATTGGTCTTGGGAAATCGACTTCTTCCACATTTTCTTTCCGTAATTTCGGTGAAGCTTTTGCTGCTGCTGCTAAGTCTACTCAAGCCA
ACAGTGCTGCCGTCACCCTTGCAACAATAGACAGCATCACAAATGACTATAAGCTCAACACTGCTTCAGCAATTGCTTCTGGGACTGTGTTGGGTTTGTA
CGAAGACAATCGGTACAAATCAGAATCAAAGAAACCGGTTCTTAAATCTGTTGATCTGATCGGTCTTGGAAGTGGAGCTGAAATAGAGAAGAAGCTAAAA
TATGCTGAAGAGGTATCCACTGGGATAATTTTTGGGAAAGAACTTGTCAATTCCCCAGCTAATGTGCTCACCCCTGTTGTACTGGCTGAGGAAGCTGCCA
ATATTGCTTCGACATACAGTGACGTTTTCACGGCTACTATCCTGGACGCCGAAAAGTGCGCAGAATTGAAAATGGGGTCTTATCTGGGTGTTGCTGCAGC
GTCCGCAAATCCGCCTCGTTTCATCCATTTGTGTTACAAGCCGTCCAGTGGACCTGTTAAAACCAAGCTGGCATTGGTTGGAAAGGGTCTAACGTTCGAC
AGTGGTGGCTACAACATTAAGACAGGAGCAGGGTGTTCCATTGATTGCTTGCTGGATTTTGTCTTTTTACTGGTGGCTACAACATTAAGACAGGAGCAGG
GTGTTCCATTGAATTCCACTTGGGTTAATCTAATCTATCTTTGTTGTGCACAGATAATTGATCTGGCAACTTTAACTGGTGCCTGTGTAGTTGCTCTTGG
GCCCTCGATTGCAGGTGTATTTACACCAAGCGATGATCTGGCAAAGGAAGTGTTCACAGCAGCAGAGGTGAGTGGGGAGAAACTATGGAGGATGCCATTG
GAGGAAAGCTACTGGGAGAGCATGAAGTCAGGAGTAGCTGATATGGTGAATACAGGTGGTCGTCAGGGAGGATCTATCACTGCTGCTCTATTTTTGAAAC
AGTTTGTGGATGAGAAAGTTGAATGGATGCACATTGACATGGCTGGACCGGTGTGGAACGACAAGAAACGAGCTGCAACAGGATTCGGCATTGGAACCTT
GGTGGAGTGGGTCTTACTCAACTCTTCTTCCTAG
AA sequence
>Lus10022152 pacid=23156284 polypeptide=Lus10022152 locus=Lus10022152.g ID=Lus10022152.BGIv1.0 annot-version=v1.0
MAHSVSSFTLGLTQPNSTQLPKIVFAAKEIDAVEWKGDLLAVGVTEKDMAKDETSKFENSLLKKIDRQLSGLLSEASSEEDFSGKAGQSIVLRLPGLSSK
RIGLIGLGKSTSSTFSFRNFGEAFAAAAKSTQANSAAVTLATIDSITNDYKLNTASAIASGTVLGLYEDNRYKSESKKPVLKSVDLIGLGSGAEIEKKLK
YAEEVSTGIIFGKELVNSPANVLTPVVLAEEAANIASTYSDVFTATILDAEKCAELKMGSYLGVAAASANPPRFIHLCYKPSSGPVKTKLALVGKGLTFD
SGGYNIKTGAGCSIDCLLDFVFLLVATTLRQEQGVPLNSTWVNLIYLCCAQIIDLATLTGACVVALGPSIAGVFTPSDDLAKEVFTAAEVSGEKLWRMPL
EESYWESMKSGVADMVNTGGRQGGSITAALFLKQFVDEKVEWMHIDMAGPVWNDKKRAATGFGIGTLVEWVLLNSSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Lus10022152
[exp]
0 1
AT4G38510 ATPase, V1 complex, subunit B ... Lus10025081
[exp]
1.0 0.8948
AT1G73590 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORME... Lus10009685
[exp]
4.6 0.8255
AT4G38510 ATPase, V1 complex, subunit B ... Lus10005057
[exp]
4.9 0.8739
AT4G38510 ATPase, V1 complex, subunit B ... Lus10027827
[exp]
5.5 0.8673
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Lus10007692
[exp]
8.7 0.8775
AT5G41950 Tetratricopeptide repeat (TPR)... Lus10001675
[exp]
8.7 0.8850
AT4G35260 IDH-I, IDH1 isocitrate dehydrogenase I, is... Lus10028374
[exp]
10.7 0.8584
AT3G06720 IMPA1, IMPA-1, ... importin alpha isoform 1 (.1.2... Lus10010933
[exp]
15.4 0.8346
AT4G39080 VHA-A3 vacuolar proton ATPase A3 (.1) Lus10028796
[exp]
17.5 0.8391
AT1G67930 Golgi transport complex protei... Lus10020753
[exp]
21.0 0.8439

Lus10022152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.