Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30900 409 / 5e-145 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036262 [exp] 314 / 1e-109 AT4G30900 298 / 8e-103 DNAse I-like superfamily protein (.1.2) Lus10036263 [exp] 195 / 6e-63 AT4G30900 202 / 3e-65 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G184300 [exp] 431 / 6e-154 AT4G30900 550 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.018G106700 [exp] 420 / 3e-149 AT4G30900 541 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022154 pacid=23156287 polypeptide=Lus10022154 locus=Lus10022154.g ID=Lus10022154.BGIv1.0 annot-version=v1.0 ATGAGTGTTTCTATTACTGTAATGACCTTCAATCTGCATGAAGAAGATCAGGCGGAAGCGGGAGAGGATAGACCCAATTCATGGGAGAAGAGGCGAGATT TATGTTTGAGCGTCATTACTAGTTACTCCCCTCTCATCCTTTGTACCCAACAAGGTGTGAAGTCACAGTTGGACTATCTTCAGCAGGGTTTGCCAGGTTA TGATCAATTCGGAGTATCAAGGAAAGGATTTGAGGATAGTACAGATGAACACTGCACCATCTTCTACGACAAGGAGAAGATAGTAAATACAAACATGGAT GAGTCAAGTCCTCGTGCCAGAAGACGAAGTGCTTTGCTTACTTGGCAGCATATCGCGTCCTTACCTCCTAGCCTGCCAGTCGTTTACTGCGGAGGGTTTA ACACTCAAAAGGAATCGACCACGGGACGTTTTCTTCTTGGTAGATCAAGAGAGCATGGTTCGATGGGAGACATGAAGGACACATGGCCTAATGCTCGAGT AAGGAAAAATGTGTCGCTGATACGCACGTATCACGGATTCAAAGGTAACAAGCAAGGAGCCCTCGAATTTGTGAAGTTGATCTTCAGGGCGTTGTGTCTT TGCTGGGACAGACAAACTCAGGATCTCCATGTAGATTGGATTCTCTACAGGGGAAGATCTTTAATCCCATCTCTATGTGAAGTTGTGAGTGACAACGTTG ATGGATACTACCCTTCCTCTCACTACCCGATTTTCGCAGAATTCATGCTTCCACGTTCTGTCAGACTTGCCGAACCAGCAGCAGTAGTAGGACCAGAGCA AGCTTCATCTTGA
AA sequence Show only first row Show all	>Lus10022154 pacid=23156287 polypeptide=Lus10022154 locus=Lus10022154.g ID=Lus10022154.BGIv1.0 annot-version=v1.0 MSVSITVMTFNLHEEDQAEAGEDRPNSWEKRRDLCLSVITSYSPLILCTQQGVKSQLDYLQQGLPGYDQFGVSRKGFEDSTDEHCTIFYDKEKIVNTNMD ESSPRARRRSALLTWQHIASLPPSLPVVYCGGFNTQKESTTGRFLLGRSREHGSMGDMKDTWPNARVRKNVSLIRTYHGFKGNKQGALEFVKLIFRALCL CWDRQTQDLHVDWILYRGRSLIPSLCEVVSDNVDGYYPSSHYPIFAEFMLPRSVRLAEPAAVVGPEQASS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	0	1
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	1.0	0.8866
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	3.7	0.8386
AT4G17190		FPS2	farnesyl diphosphate synthase ...		Lus10022545 [exp]	3.7	0.8841
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	3.9	0.8620
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	4.2	0.8202
AT5G17620			unknown protein		Lus10013643 [exp]	4.5	0.8597
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	6.9	0.8340
AT2G45320			unknown protein		Lus10030280 [exp]	7.1	0.8218
AT5G17620			unknown protein		Lus10001340 [exp]	8.8	0.8303
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Lus10039339 [exp]	9.1	0.7977

Compare expression of checked genes

Lus10022154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.