Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57940 1033 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G23980 1017 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 1016 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 948 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 926 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G53130 716 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 681 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT2G28260 676 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT4G01010 675 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G24610 655 / 0 ATCNGC14 cyclic nucleotide-gated channel 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036260 [exp] 1314 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 944 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 941 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10019014 [exp] 716 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 695 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 684 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10021461 [exp] 678 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 670 / 0 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 664 / 0 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106100 [exp] 1115 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 965 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 941 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.012G002200 [exp] 732 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 727 / 0 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G097600 [exp] 688 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.002G170000 [exp] 682 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 669 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.009G010700 [exp] 661 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G009200 [exp] 635 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022155 pacid=23156302 polypeptide=Lus10022155 locus=Lus10022155.g ID=Lus10022155.BGIv1.0 annot-version=v1.0 ATGCTCGATTGTGGTTTAAAGACACAGTACCTGCCTGCTCAAAGGGAAAAGTTTGTTAGACTGGATGATTTGGACTCAAGAGTATCATCATCACCATCCG AGACAGGGATAAGAAGATGTGGATTCGGCATTGAAGCTCTAACATGTGCCGGTCAGCCACCAGATACACCATCCAGATCTTTCAAGAGAGGGATAAAGAA AGGATCCGAAGGACTCAAGTCCATCGGTCGATCCCTTCGATTTGGAGTCACTCGTGCTGTCTTCCCGGAAGATCTCAAAGTTTCAGAGAAGAAGATATTT GATCCACAGGACAAATTCCTGATGCTGTGCAATAAGCTCTTTGTGGTGTCCTGCATTTTGGCTGCGTTTGTTGATCCATTCTTCTTTTACCTCCCAGTGT TCAATGATAATGGGTTTTGCCTTGGGATTGATCGCAAGTTAGCACATACAGTGTCAACGTTGAGGACCGTTGTTGATGTTTTCTACCTTGCTCGCATGGC TCTCCAGTTTCGGACGGCTTACATTGCTCCTTCCTCGAGGGTGTTTGGACGTGGGGAACTAGTGATTGATCCTGCTCAGATAGCTAAGCGCTATATGCTC AGATGCTTCTTGATTGATTTCCTTGCTGTCTTCCCCTTACCTCAGATTGTGGTCTGGAAGTTTCTTCACAGCTCACAAGGCTCCGATGTCCTAACGACGA AAAGGGCTCTCCTTTGCATTATTTTGATCCAATACATTCCTAGGTTTCTTCGGTTTCTGCCCATAACTTCAGAGCTTAAAAGAACAGCAGGTGTCTTTGC AGAGACTGCTTGGGCAGGTGCTGCGTGTTATCTGCTACTTTACATGCTTGCAAGTCATGTTGTTGGTGCATTATGGTACTTGCTAGCCATAGAAAGGAAA GACGCATGCTGGCAAAAGGCTTGTACCCCAGATGCAAAATGTCAAATGAATTTCTTGTACTGTGGAAACCAGTTCTTGCAAGGCTTTGATGCATGGAGCG CATTGCGGAACGACACTCTCGAAAACAATTGCAAAACAGAAGAAGATGGACCGTTTGACTATGGAATCTTCTTAAATGCTTTGTCTTCAGGTGTTGCCTC TTCCAAGGAGTTCATCGCTAAATATTGCTATTGTCTGTGGTGGGGACTTCAGAACTTGAGTACACTAGGTCAGGGTCTTCAAACCAGCACATATCCAGGA GAGGTTATCTTCTCTATAGCACTCGCAATATTTGGACTAATCCTCTTCGCACTTCTCATTGGTAACATGCAGACCTATCTTCAATCACTTACAATACGTC TGGAAGAAATGAGGGTGAAGAGGCGAGACTCAGAGCAGTGGATGCGTCATCGCTTACTTCCAACAGAGCTCAAGGAGAGGGTTAGGCGGTACGACCAATA CAAGTGGCTGGCAACTCGTGGAGTTGATGAAGAGAGCTTGGTTCAGAGCCTCCCTAAGGATCTTAGGAGAGACATCAAACGTCATCTTTGTTTGGCTTTA GTCCGGCGGGTTCCTCTATTTGAAAACATGGATGAAAGACTCCTTGATGCAATATGCGAGCGGCTGAAGCCATGCTTATTCACAGAATCAACTTACATGG TTAGAGAAGGAGATCCGGTGGACGAAATGCTCTTCATCATCCGGGGTCGACTCGAGAGTGTTACTACAGATGGTGGGAGGAGTGGCTTCTTCAACCGCAG TTTCCTCAAAGAAGGAGATTTCTGCGGAGAGGAACTCTTAACATGGGCGCTTGATCCCAAATCAGGAGGAAACTTACCATCTTCAACTCGAACTGTGAGG GCAATCACTGAAGTTGAGGCCTTTGCACTGATTGCTGACGAATTGAAATTTGTAGCGAGTCAGTTCAGAAGGCTGCATAGCAGGCAAGTGCAGCACACGT TCAGGTTCTACTCTCAGCAGTGGAGAACTTGGGCTGCTTGTTTTATACAGGCGGCCTGGAGAAGATATACTAAGAGGAAAAACATGGAGCAGCGTCGCAA GGAAGAAGAAGAGGAGGATGGCGAAACGGTGGCTGAAGAAGCATCAGAGTCATCGGCTCGAAGCAGTAATGTTGGAGCAGGAGGATCATACAGTATAGGA GCTACGTTTTTGGCATCAAGGAACAGGAATGCCAAGACTGCTAGGGAATTGGTGACACTTCAGAAGCCTCCTGAACCAGATTTCACGGCTGACGATGCTT GA
AA sequence Show only first row Show all	>Lus10022155 pacid=23156302 polypeptide=Lus10022155 locus=Lus10022155.g ID=Lus10022155.BGIv1.0 annot-version=v1.0 MLDCGLKTQYLPAQREKFVRLDDLDSRVSSSPSETGIRRCGFGIEALTCAGQPPDTPSRSFKRGIKKGSEGLKSIGRSLRFGVTRAVFPEDLKVSEKKIF DPQDKFLMLCNKLFVVSCILAAFVDPFFFYLPVFNDNGFCLGIDRKLAHTVSTLRTVVDVFYLARMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYML RCFLIDFLAVFPLPQIVVWKFLHSSQGSDVLTTKRALLCIILIQYIPRFLRFLPITSELKRTAGVFAETAWAGAACYLLLYMLASHVVGALWYLLAIERK DACWQKACTPDAKCQMNFLYCGNQFLQGFDAWSALRNDTLENNCKTEEDGPFDYGIFLNALSSGVASSKEFIAKYCYCLWWGLQNLSTLGQGLQTSTYPG EVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMRHRLLPTELKERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLAL VRRVPLFENMDERLLDAICERLKPCLFTESTYMVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGGNLPSSTRTVR AITEVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYTKRKNMEQRRKEEEEEDGETVAEEASESSARSSNVGAGGSYSIG ATFLASRNRNAKTARELVTLQKPPEPDFTADDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	0	1
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10001021 [exp]	1.0	0.9255
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	2.4	0.9174
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	2.8	0.8877
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	2.8	0.8566
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	3.0	0.8921
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	3.2	0.8805
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10005703 [exp]	4.9	0.8721
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	5.7	0.8536
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	7.5	0.8242
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	8.0	0.8118

Compare expression of checked genes

Lus10022155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.