Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30580 330 / 1e-110 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) AT3G05510 52 / 4e-07 Phospholipid/glycerol acyltransferase family protein (.1.2) AT1G80950 47 / 1e-05 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036259 [exp] 630 / 0 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10020650 [exp] 52 / 1e-06 AT3G05510 438 / 1e-150 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10003950 [exp] 45 / 0.0001 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 44 / 0.0002 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183700 [exp] 375 / 6e-128 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Potri.011G138900 [exp] 71 / 2e-13 AT4G30580 73 / 2e-14 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Potri.005G025400 [exp] 46 / 4e-05 AT3G05510 529 / 0.0 Phospholipid/glycerol acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10022158 pacid=23156295 polypeptide=Lus10022158 locus=Lus10022158.g ID=Lus10022158.BGIv1.0 annot-version=v1.0 ATGCCGATTAGCCACTCGAGAAGCTATCGTTCCAGTCCGTTGGATTCAGATTGTCATCGTTTGTATGTGCATATGACCCAACCGGACGGTTTAGATCGGA GAGGAAGATTTGACGGTGGGGAGAACAGGCACAATAAATTCAAGTTGGGGAGTTTGTCGCCATTGGCACTCATGGACATCGCTTCTCCGCCTTTCCACTC GTTTCCTCGTCCATGTTATGGAAGATCGAGATCTTCTGCTTTATCCCTCTCATTACCTTTTGGTGTTGCTGTTGAACGAATGAATTTTATGAATGGATGT AATTCCTACGCTTCAATGCAGTTCTCATCATGTAAGGGACCGTACAGTATCAAGCTTCCAGCTTTGATGAGTACTACCACCTCTGCGCTAAGTTGTTTTT CATGTAGTTCAAGGAAGCTCTCATCTGTCCCTTGCCGTCCTTGTTCTGAAGAGCAGTTCAACAGACCATATCCCGTTTGTAGTAAACTATGGACACCTAG TAAGCCGTCCATTCAGACTGTCATATGGTCTGAACTTGCTGGTTCTGGGATTACTGATATTCATCCACATCCATCATCTGAGGTTAGCCTGATCTCAAGA GTGAGAGGATTTGGATTTTACACCGTCACCGCCACTGCTGCAATGTTTCTAATTGTGGTGATGCTGGCTCAACATCTTGCTGTGCTTTCCTTTGACCGAT ACAGAAGAAAAGCTCATCATTTTATTGCCAGTCTATGGGCGAAGATAGCAGTGACATTAGCAGTGACACCTTTTCTAAACATTGAGTTTGTGGGAGTGGA GAATCTGCCACCTGCAGACTCTCCAGCAGTGTATGTTTCCAACCACCAGAGCTTCCTAGATATATACACTCTTCTCACCTTTGGAAGATGCTTTAAGTTC ATCAGCAAGACGTCCATTTTTCTGTACCCAATTATTGGATGGGCGATGTCCATGCTTGGTACGATTCCCTTGAAGCGCATGGACAGCAGAAGCCAGTTGG AATGTCTTAAACGATGCATTGACCTGGTGAATAAGGGTGCATCTGTGTTCTTCTTCCCAGAGGGAACTCGTAGTAAAGACGGGAAATTGGGTGCTTTCAA GAAAGGAGCATTCAGCGTTGCAGCAAAAACAGGGGTGCCAGTCATCCCAATGACGATAATGGGAACTGGAGGAATCATGCCTCCAGGAAAAGAGGGCATC TTGAATTTAGGTTCCGTAAAAGTTGTCATTCACGAGCCATTACAAGGAAATGATGCTGCAGTTCTGTGCGATGGAGCTAGAACATTAATTGCAGGTCCTC TCATTAACCAGCAAAGCTATGGAGTCTCATCTCATCACCACAGCTTTCCAGAATAG
AA sequence Show only first row Show all	>Lus10022158 pacid=23156295 polypeptide=Lus10022158 locus=Lus10022158.g ID=Lus10022158.BGIv1.0 annot-version=v1.0 MPISHSRSYRSSPLDSDCHRLYVHMTQPDGLDRRGRFDGGENRHNKFKLGSLSPLALMDIASPPFHSFPRPCYGRSRSSALSLSLPFGVAVERMNFMNGC NSYASMQFSSCKGPYSIKLPALMSTTTSALSCFSCSSRKLSSVPCRPCSEEQFNRPYPVCSKLWTPSKPSIQTVIWSELAGSGITDIHPHPSSEVSLISR VRGFGFYTVTATAAMFLIVVMLAQHLAVLSFDRYRRKAHHFIASLWAKIAVTLAVTPFLNIEFVGVENLPPADSPAVYVSNHQSFLDIYTLLTFGRCFKF ISKTSIFLYPIIGWAMSMLGTIPLKRMDSRSQLECLKRCIDLVNKGASVFFFPEGTRSKDGKLGAFKKGAFSVAAKTGVPVIPMTIMGTGGIMPPGKEGI LNLGSVKVVIHEPLQGNDAAVLCDGARTLIAGPLINQQSYGVSSHHHSFPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10022158 [exp]	0	1
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	2.6	0.8381
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	2.8	0.7971
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	6.6	0.8334
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	12.1	0.8162
AT1G31500			DNAse I-like superfamily prote...		Lus10000006 [exp]	13.7	0.7711
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	16.2	0.8348
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	16.9	0.7612
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	17.3	0.7881
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	19.7	0.8348
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	22.6	0.7832

Compare expression of checked genes

Lus10022158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.