Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57910 88 / 6e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036255 [exp] 410 / 7e-146 AT5G57910 105 / 2e-27 unknown protein Lus10036591 [exp] 186 / 5e-58 AT5G57910 117 / 4e-32 unknown protein Lus10035808 [exp] 178 / 5e-55 AT5G57910 116 / 6e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G183000 [exp] 172 / 1e-52 AT4G30630 105 / 2e-27 unknown protein Potri.018G105300 [exp] 126 / 2e-35 AT5G57910 102 / 8e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022161 pacid=23156306 polypeptide=Lus10022161 locus=Lus10022161.g ID=Lus10022161.BGIv1.0 annot-version=v1.0 ATGAAGAGGATGAAGAAGGGTCTTGATGTTGCTCCTCCCCCTTCATATGCTGCTGCGTACGAGGATCCCAGGATCAGATTCAAGCGTGAGAGCCTTTTGC AGGACTATGATGAATTGTTAAAGGAAACAGAAGCAAAGAGGAAGAGAATGGAAGTGATGAGAAAGAAGAAAATGACTCTAATGGCTGAAGTGAAATTCTT GAGGCGCAAGTTCAGTCACTTGGTAGAAAACCAGATACCTCAGAAGCTTAAGCCAGATCAATGTCTGTTGCAATCAGAGATGAAGAGTAAAAAAGTAAGG AACAGAGGAACGATGAACAACTCCATTAGCCATGATCCGTGTCAGCCAGCTCTGATATTTGATTTGAACCGGAAGGGTAGGGTGATGCAGGGTGGCAAGG AATCTGTTAAACAAAATAAGTGTCACAAGGGAAGAAGAGAAGCTGCATTGAGAAATTTCGGAACGATTCCGGACATTAATGTGAAGGAGAGGAAGGATGC TGATGTTGGAAACAATGCCCCGTTTTTTGACTTGAACCAGATATCGGTAAAGAATCAGTTCTACTCTAAAACTATTAAGAATCAAGGTTTTGGCTTCCTT GGACATAATAATGTTGATTCTCCAACGTCATTGCAGATGGAAGAGGAAGAATTGCAGAGCAGTGGTGAGATGATGATGATGAATTCGTTGCGAGGAGGAA TTGCTGAGCAACATATACACAAGGATGAGAAGTTATTTGGTTGTAGGAACTTGGGGAATGGGTCGAGCCGGGAAGGGAAAAGGAAGATATCATGGCAGGA CCCAGTCGCCTTAAGGGTGTGA
AA sequence Show only first row Show all	>Lus10022161 pacid=23156306 polypeptide=Lus10022161 locus=Lus10022161.g ID=Lus10022161.BGIv1.0 annot-version=v1.0 MKRMKKGLDVAPPPSYAAAYEDPRIRFKRESLLQDYDELLKETEAKRKRMEVMRKKKMTLMAEVKFLRRKFSHLVENQIPQKLKPDQCLLQSEMKSKKVR NRGTMNNSISHDPCQPALIFDLNRKGRVMQGGKESVKQNKCHKGRREAALRNFGTIPDINVKERKDADVGNNAPFFDLNQISVKNQFYSKTIKNQGFGFL GHNNVDSPTSLQMEEEELQSSGEMMMMNSLRGGIAEQHIHKDEKLFGCRNLGNGSSREGKRKISWQDPVALRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57910			unknown protein		Lus10022161 [exp]	0	1
AT5G06440			unknown protein		Lus10021251 [exp]	1.0	0.8864
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	3.5	0.8676
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10012252 [exp]	4.0	0.8434
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	4.2	0.8611
AT1G55170			unknown protein		Lus10034321 [exp]	10.6	0.8106
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	11.2	0.8357
					Lus10011739 [exp]	12.0	0.7827
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	12.4	0.8181
AT1G28250			unknown protein		Lus10014006 [exp]	12.5	0.8132
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10023543 [exp]	12.5	0.7802

Compare expression of checked genes

Lus10022161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.