Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 450 / 1e-156 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 382 / 6e-130 HXXXD-type acyl-transferase family protein (.1) AT2G19070 305 / 6e-100 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 250 / 1e-78 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 243 / 9e-76 HXXXD-type acyl-transferase family protein (.1) AT3G48720 227 / 9e-70 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G65450 199 / 4e-59 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G03390 195 / 3e-57 HXXXD-type acyl-transferase family protein (.1) AT1G27620 187 / 3e-54 HXXXD-type acyl-transferase family protein (.1) AT2G40230 157 / 2e-43 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010786 [exp] 872 / 0 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 433 / 6e-150 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 418 / 5e-144 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 405 / 6e-139 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026097 [exp] 362 / 2e-122 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 320 / 7e-105 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 289 / 4e-93 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 285 / 1e-91 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10012552 [exp] 271 / 8e-87 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104700 [exp] 514 / 0 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 482 / 2e-169 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 471 / 3e-165 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 469 / 4e-164 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 441 / 6e-153 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 439 / 4e-152 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 325 / 2e-107 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 306 / 7e-100 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 259 / 5e-82 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 251 / 5e-79 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10022163 pacid=23156271 polypeptide=Lus10022163 locus=Lus10022163.g ID=Lus10022163.BGIv1.0 annot-version=v1.0 ATGAAGGTAACAGTGAAGGAGACGACCATCGTCCGGCCGCAGTCGGATACCCCACGGCGCAGTATATGGCTGTCCAACATGGATCTCCTACACGGCCGCA TCCACCTCCCTACCATCTACCTCTACAAGCCAGACGGCTCCGCTGACTTTTTTGACTCCGAATCTCTTAAGAATGCTCTCTCTATGCTCCTAGTAACCTT TTACCCTGCCGCCGGGAGGCTCTCCAAGGACGAGAAAGGCAGGATCGAGATCGACTGCAATGGCGAAGGCGTCCTGTTCTGTGAAGCTGAGACGGATCTA AAAATGTCTGACCTTGGAGAGTTCATGCCTGGGACTGAACTTCTTCAGTTCGTTCCTAGAGTTGACTACTCTGCTAGCATTTCTTCTTACCCTCTTTTCA TCACCCAGGTAACAAGATTCTCATGCGGAGGAGTATGCGTGGGAACCGGCTGGCACCACACTGCGGCTGATGGCGAAGGCGCGCTGAGCTTCATCAACGC CTGGTCCGACGTGGCACGTGGGAAACCGGTGCTGGTCCAACCGTTCCTTGACCGAACCCTTCTCAAAGCCCGATCCCCACCCAGCCCAAAGTTTGACCAC CTGGAGTACGCTCCACCGCCGTCAATGATAACCGGGGAAGAGAAAAAGGAAGATGAATCGACATCCATGGCCATCCTCCAGATCACACTCGACCAAATCA ACAGCCTGAAAGAGCGAGTCAACAGAGATAACGAATCCAAGACTAAGTACAGCACCTACGAGATCTTGACCTCCCACATCTGGCGCGCCGTCACCAAGGC CCGTGACCTCCCAGCCGAACAGCCTACCAAGCTCCACATCTCCACCGACGGAAGGACTCGCCTCAATCCTCCGCTTCCCAAAGGATACCTCGGCAACTGC GTCTTCCACGCCACGCCGACCGCTACATCCGGAGATCTGTTGTCCGAGCCGCTTATCCGGACCGTGGACCGGATCCACGACGCCATCAAGAGGATGGACG ACGAGTACCTGAGATCCGCGATCGATTATTTGGAAGATCCGAACGATTCGTCGGCGATAATGCAGGTTCCGGGGACTTGCAGGACGCCGAATCTGAAGAT TATTAGCTGGATGCGGCTGCCGTTCGAGTGCGCTGATTTCGGATGGGGGAAGCCGATTTTTAACAGGCCGGCGAATCTTTTCGAAGGGAAAGGGAATATC CTCCCCAAGTACAGCGTCGACGGGAATCTATCGCTGGCGCTCTGCTTGGAGACTTACGCCATGGAGAATTTCAGGAAGACGTTTTACGATGTCACTGTGT GA
AA sequence Show only first row Show all	>Lus10022163 pacid=23156271 polypeptide=Lus10022163 locus=Lus10022163.g ID=Lus10022163.BGIv1.0 annot-version=v1.0 MKVTVKETTIVRPQSDTPRRSIWLSNMDLLHGRIHLPTIYLYKPDGSADFFDSESLKNALSMLLVTFYPAAGRLSKDEKGRIEIDCNGEGVLFCEAETDL KMSDLGEFMPGTELLQFVPRVDYSASISSYPLFITQVTRFSCGGVCVGTGWHHTAADGEGALSFINAWSDVARGKPVLVQPFLDRTLLKARSPPSPKFDH LEYAPPPSMITGEEKKEDESTSMAILQITLDQINSLKERVNRDNESKTKYSTYEILTSHIWRAVTKARDLPAEQPTKLHISTDGRTRLNPPLPKGYLGNC VFHATPTATSGDLLSEPLIRTVDRIHDAIKRMDDEYLRSAIDYLEDPNDSSAIMQVPGTCRTPNLKIISWMRLPFECADFGWGKPIFNRPANLFEGKGNI LPKYSVDGNLSLALCLETYAMENFRKTFYDVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10022163 [exp]	0	1
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10034650 [exp]	6.2	0.7616
AT3G09280			unknown protein		Lus10018504 [exp]	12.9	0.8167
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	15.0	0.7556
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	17.0	0.8046
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031007 [exp]	20.8	0.8039
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10021965 [exp]	22.7	0.7557
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	23.4	0.7802
					Lus10033901 [exp]	24.4	0.7961
AT4G31920	GARP	ARR10	response regulator 10 (.1)		Lus10025044 [exp]	26.3	0.8012
AT5G13825			unknown protein		Lus10000042 [exp]	31.5	0.7998

Compare expression of checked genes

Lus10022163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.