Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57870 894 / 0 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 753 / 0 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT4G30680 236 / 5e-72 Initiation factor eIF-4 gamma, MA3 (.1) AT1G62410 199 / 6e-59 MIF4G domain-containing protein (.1) AT3G60240 188 / 4e-49 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT1G56040 89 / 3e-18 HEAT/U-box domain-containing protein (.1) AT4G24800 69 / 1e-11 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 66 / 7e-11 MA3 domain-containing protein (.1.2) AT3G48390 64 / 3e-10 MA3 domain-containing protein (.1) AT1G22730 52 / 1e-06 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010782 [exp] 1351 / 0 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 723 / 0 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035813 [exp] 717 / 0 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 284 / 2e-91 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10028156 [exp] 218 / 1e-58 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 217 / 1e-58 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036256 [exp] 165 / 7e-45 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10018085 [exp] 54 / 4e-07 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10011324 [exp] 54 / 5e-07 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104100 [exp] 1034 / 0 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 1023 / 0 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 909 / 0 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 887 / 0 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 209 / 6e-56 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 204 / 2e-54 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.012G091900 [exp] 64 / 4e-10 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.015G088300 [exp] 60 / 5e-09 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.005G199200 [exp] 56 / 1e-07 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10022168 pacid=23156286 polypeptide=Lus10022168 locus=Lus10022168.g ID=Lus10022168.BGIv1.0 annot-version=v1.0 ATGCAGCAAGGTGATCAAACGGTGTTAAGCTTGAGGCCTGGTGGTGGTCGAGGAGGCAGCAGCAGATTCTTCAACCCACGTTCGGAATCTGCCAACAATT CCTCTGCCGCCGCTACTGGTGATCATCTCCGCCGTCATGGCGGCGCTTCTTTCTTCAAGACTGGCGACTTGCGCTTTGAGGGTCGTGAGCGGTTGTGCTA CACCAGGGAGCAGCTATTGAAGATTAAGGAGACTGCTGTCGTCTCTGATGAGATTCTGAAAATCAAACAAGAGATTGACACTGAGCTTTTCGGTGAAGAG CAAAGCTGGAGTCGTGGAGAGAGCAACCCACCAAATCAACAATCCCAACAACCTCAGGGTCGTTATTCTGAGCCAGACACTCGTGACTGGCGTACTCGTT CTATGCAGCTTCCTAGTCCTGCTCCAGGTGAAGAGAGGTCTTGGGACTCTATCAAAGATAGAGATTTGGTAGGGCAGAATGATTCTAGGAAGCCTGATGG AAATCAATTCACTCGTCAAGATCAGTTAAATTCTCAATTCTCCCGGGCACAAATATCTTCAAATCAGTCGGGTGGTCCTCCTCCCGCCTTGGTGAAAGCT GAGATGCCATGGTCAGCTAGGCGAGCCACTCTTTCTGATAAAGACCGCGTCTTAAAGACTGTGAAGGGTATTCTCAACAAGCTTACTCCAGAAAAGTTCG ATCTTCTGAAAGGCCAACTTATCGACTCAGGCATCACATCAGCTGATATTTTGAAGGGTGTAATCTCCCTTATATTCGAAAAAGCTGTGCTGGAACCCAC ATTTTGTCCCATGTATGCGAAGCTCTGTTCTGACCTTAACGAAAAGCTTCCTCCATTCCCTTCAGATGAGCCTGGTGGGAAAGAAATAACATTTAAGAGA GTCCTCTTGAACAATTGCCAAGAGGCGTTTGAGGGTGCTGATAAACTAAGGGAAGAAGTGATGCAACTGACGGCCCCAGATCAGGAGCTTGAGCGTAAGG ACAAGGAAAGGATGGCGAAGCTTCGTACCCTTGGAAACATACGCTTGATTGGTGAGCTTTTAAAACAGAGGATGGTTCCTGAAAAGATTGTTCATCACAT TGTTCAGGAGCTACTGGGTGCTGATAATAAGATTTGTCCTGCGGAAGAAAATGTCGAAGCCATATGTCATTTCTTCAATACAATTGGCAAGCAGCTTGAT GAGGGACCAAAGTCTCGACGAATCAATGATCTGTACTTTGGCCGTTTGAAAGAGCTCGCTTCGAATCCTCAACTGGCTTCACGTCTGAGGTTCATGGTTA GGGATGTTATTGATCTGCGATCAAACAACTGGGTTCCTAGGCGTGAGGAGGTCAAAGCCAAAACCATAACTGAGATACATTCGGATGCAGAAAAGATGCT TGGTTTACGTCCAGGTGCTACTGCAAGTATGAGAAATAATCGCGTTGTTTCTGCTGCTCCTGGAGTTGGCCAGCCTGGTGGCTTTTCCATCAACAGACCT GGGGCTGGGGGCATGATGCCTGGAATGCCAGGAACAAGGAGAATGCCTGGTATGCCTGGAATTGATGCCGATAACTGGGAGATGCCCAGGAGATCAATTC CAAGGGGTGAAGCCCCGAATGTTCAGCCAGTGGGACGTGTTCAACCGCCATTGTTCAATAAGTTGACATCAATGAACACAAAGTACTTACCTCAAGGTAG TGGTGGCTTCATAAGTGGGAAAAGTAGCGCGCTTTTGCAAGGAAGTGCTGCTCCTGCTCCTACTCGTATTGAGCCCCTCACTCAAAGTCCTCTACCTGGA AGGGTTTCTCCAGTCGTCGAAAAACCAGCTGCTGCTCCATCTGGGAAGATGAATGTCGATGAACTCAACAGGAAAACTGCCTCAATCTTGAAAGAATACT TCAGCATCAGAATCCTTGACGAAGCATTGCAATGCGTCGAGGAACTGAAGACTCCAGCCTACCATTCTGAATTTGTCAAGGAAGCGATTGCTCTTGGTCT TGAGGAGAACCCTCCTTGTGTGGAACCTGTAATCAAGCTCCTTGAATACTTGTCAGCAATGAAGGTCTTCACTACCCGTGACATTGGAACTGGTTGTTTG CTCTATGGGACCATGTTGGATGACATTGGCATCGACCTGCCGAGAGCACCAAACAACTTTGGTGAGATTGTCGGGAAGCTTATCCTGGCTGGTATACTTG ACTTCAAAGCTGTTGCAGAGATACTGAAGAAGATGGAGGATGACATGTACCAGAAAGCAGTTTTGGAGGCAGCAGTGAAGACTGTCAAATCTAGCTCCCA ACAAGGTATACTAGATACGCAGGCTGCAGATATCGAGGCTTGTGAAAGTTTGTTCCAGTAA
AA sequence Show only first row Show all	>Lus10022168 pacid=23156286 polypeptide=Lus10022168 locus=Lus10022168.g ID=Lus10022168.BGIv1.0 annot-version=v1.0 MQQGDQTVLSLRPGGGRGGSSRFFNPRSESANNSSAAATGDHLRRHGGASFFKTGDLRFEGRERLCYTREQLLKIKETAVVSDEILKIKQEIDTELFGEE QSWSRGESNPPNQQSQQPQGRYSEPDTRDWRTRSMQLPSPAPGEERSWDSIKDRDLVGQNDSRKPDGNQFTRQDQLNSQFSRAQISSNQSGGPPPALVKA EMPWSARRATLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFEKAVLEPTFCPMYAKLCSDLNEKLPPFPSDEPGGKEITFKR VLLNNCQEAFEGADKLREEVMQLTAPDQELERKDKERMAKLRTLGNIRLIGELLKQRMVPEKIVHHIVQELLGADNKICPAEENVEAICHFFNTIGKQLD EGPKSRRINDLYFGRLKELASNPQLASRLRFMVRDVIDLRSNNWVPRREEVKAKTITEIHSDAEKMLGLRPGATASMRNNRVVSAAPGVGQPGGFSINRP GAGGMMPGMPGTRRMPGMPGIDADNWEMPRRSIPRGEAPNVQPVGRVQPPLFNKLTSMNTKYLPQGSGGFISGKSSALLQGSAAPAPTRIEPLTQSPLPG RVSPVVEKPAAAPSGKMNVDELNRKTASILKEYFSIRILDEALQCVEELKTPAYHSEFVKEAIALGLEENPPCVEPVIKLLEYLSAMKVFTTRDIGTGCL LYGTMLDDIGIDLPRAPNNFGEIVGKLILAGILDFKAVAEILKKMEDDMYQKAVLEAAVKTVKSSSQQGILDTQAADIEACESLFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	3.2	0.9020
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	4.5	0.9086
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	5.5	0.8860
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	9.8	0.8684
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	10.0	0.8649
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	13.8	0.8766
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	14.0	0.8571
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	14.3	0.8765
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	14.7	0.8723
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	16.0	0.8570

Compare expression of checked genes

Lus10022168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.