Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18430 257 / 4e-89 Calcium-binding EF-hand family protein (.1.2) AT3G51920 60 / 8e-12 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT3G22930 55 / 8e-10 CML11 calmodulin-like 11 (.1) AT4G16350 50 / 1e-07 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT1G24620 47 / 7e-07 EF hand calcium-binding protein family (.1) AT4G01420 45 / 4e-06 CBL5 calcineurin B-like protein 5 (.1) AT1G64480 45 / 5e-06 CBL8 calcineurin B-like protein 8 (.1) AT4G33000 43 / 3e-05 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT5G24270 42 / 6e-05 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT5G37770 41 / 0.0001 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010775 [exp] 322 / 1e-114 AT3G18430 273 / 6e-95 Calcium-binding EF-hand family protein (.1.2) Lus10029670 [exp] 244 / 1e-83 AT3G18430 277 / 1e-96 Calcium-binding EF-hand family protein (.1.2) Lus10042708 [exp] 236 / 8e-81 AT3G18430 271 / 4e-94 Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 50 / 6e-08 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10001816 [exp] 49 / 3e-07 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10038764 [exp] 48 / 6e-07 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1) Lus10003191 [exp] 47 / 1e-06 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10039098 [exp] 47 / 2e-06 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10037648 [exp] 45 / 9e-06 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103600 [exp] 271 / 2e-94 AT3G18430 264 / 2e-91 Calcium-binding EF-hand family protein (.1.2) Potri.003G030300 [exp] 251 / 7e-87 AT3G18430 295 / 6e-104 Calcium-binding EF-hand family protein (.1.2) Potri.005G138000 [exp] 49 / 2e-07 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.011G094900 [exp] 49 / 2e-07 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.006G002900 [exp] 48 / 3e-07 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.016G003500 [exp] 48 / 4e-07 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.005G215700 [exp] 47 / 4e-07 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.007G042900 [exp] 40 / 0.0002 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.009G102500 [exp] 40 / 0.0003 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.015G013100 [exp] 39 / 0.0005 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10022173 pacid=23156289 polypeptide=Lus10022173 locus=Lus10022173.g ID=Lus10022173.BGIv1.0 annot-version=v1.0 ATGGGGAATTCGTCCTCGATGCTGACTCAGTACGACATCGAAGAGGTCCAGGAGCACTGTTATCACGCATTTTCGCAGCAAGAGATCGTCTCGCTGTACC AGAGGTTTTGCCAACTCGATCGCAGCAGTGGTGGGTTTATATCCGCCGACGAGTTCCTCTCCGTGCCCGAGTTCGCCGTCAATCCTCTCGCTCAGAGACT GCTGAGAACGGTTGATGGATTGAATTTCAAAGAATTCGTTGCTTTCCTGTCTGCATTCAGCCCTGGCGCTACTTTACAACAGAAAATCGAATTCATCTTT AAGGTATATGATTCGGATGGAAATGGCTCAGTTTCGTTCAAAGAAATATTGGATGTGTTGCGCGATTTGACTGGACATTTTATATCTGAAGAACAGCGGG AGCAAGTGCTGAATCAGGTCCTTGAAGAAGCAGGTTACACAAAGGACTCGTTATTAGTTTTATCTGACTTTGTAAAGGTACTGTGA
AA sequence Show only first row Show all	>Lus10022173 pacid=23156289 polypeptide=Lus10022173 locus=Lus10022173.g ID=Lus10022173.BGIv1.0 annot-version=v1.0 MGNSSSMLTQYDIEEVQEHCYHAFSQQEIVSLYQRFCQLDRSSGGFISADEFLSVPEFAVNPLAQRLLRTVDGLNFKEFVAFLSAFSPGATLQQKIEFIF KVYDSDGNGSVSFKEILDVLRDLTGHFISEEQREQVLNQVLEEAGYTKDSLLVLSDFVKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	0	1
AT1G16916			unknown protein		Lus10032325 [exp]	1.4	0.8600
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10030221 [exp]	4.6	0.8228
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	5.8	0.8357
AT2G15560			Putative endonuclease or glyco...		Lus10019845 [exp]	6.2	0.8021
AT1G61470			Polynucleotidyl transferase, r...		Lus10035077 [exp]	7.9	0.7655
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	8.1	0.8288
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	9.0	0.8349
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	9.4	0.8206
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	9.6	0.8333
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	10.1	0.8241

Compare expression of checked genes

Lus10022173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.