Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30720 913 / 0 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010777 [exp] 416 / 2e-141 AT4G30720 320 / 1e-104 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10010776 [exp] 380 / 5e-128 AT4G30720 239 / 1e-74 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103700 [exp] 1011 / 0 AT4G30720 974 / 0.0 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10022174 pacid=23156308 polypeptide=Lus10022174 locus=Lus10022174.g ID=Lus10022174.BGIv1.0 annot-version=v1.0 ATGCCATTTCTCCACTCTCATTCGCTATCCCTCACTTTACATCCCTTACCCTCAATCTCTGCAACTTCTAATCCCAATCCTTACCGGTTTCGTACTTACG CAACAAAGCAACGAATCCTCTGCGCCGCTACGAAGCGGACTGGCAAGCAGAGGTACCCTTCCGAGAAGAAGAAGCTCAAGCAGAAGCGTAAGGAAACCCA CCGCGAAGTCGATGACAAATTCGTCGGAACTTGGCGCCTGTCTAAGCTCGCCGTCTCCATCCAGGACGACCCAGGGAAGGATTTTACCTCCATATCCGAT GGGTTGCTCCGAGAAATTGCTAAAGCTATCAAGTTTCCGGTTGCTTCGATGTTGCCTGCAGAAGCATTTTCAGTAGTTAGGAAGTCATTTGATGCGAGGA AGGTACTTAAAGAACCGAAATTTGTATACACGGTGGACATGGATGTCAGTAAACTTGTTAATCTAGAGCCCCGAACTGAGGATTTCATATCGGAGCTCGA CATAAAGGCTGGACTTATTGACCATATCCTCGAAGGAAGAGTAACGGGTGACTTGATCAGTATAATACGAAATGCTAGAAAAGCTGAGGAGCATGAATCT TTTGAAGGCGGAGGTAGTGCTTCCAATGGAAGTGCAAGGTTGGTGAAGAGTACAAGTCGAGAAAAACCAAAAATTGCAGTTGTGGGTGGCGGTCCTTCTG GCTTGTTTGCTTCTCTTGTTCTTGCTGAGCTTGGTGCGGATGTTACCTTGATCGAGAGAGGTCAGCCTGTCGAACAAAGGGGTCGTGACATTGGCGCTTT GATCGTCCGTAGAATCTTGGAATCTGAAAGCAATTTTTGCTTTGGCGAGGTTGTTTCGTTGCCTAGTCCCGACATTCCTTGCTATCTCTGCTTCTCAGGT GGTGCAGGTACTTGGAGTGATGGAAAGCTCGTAACGAGAATTGGAAGGAACAGTGAGAGTGTTTTGGCTGCTATGAAAACTCTGGTTCACTTTGGTGCAC CGGAGAATATATTGGTTGACGGAAAGCCTCATTTGGGAACTGATCGGCTGATTCCATTGCTCTGCAACTTTAGACAGCATTTACTTGAGCTAGGGGTTTC AATCAAGTTTGGCACACGGGTAGATGATCTAATTGTAGAGAATCGTTCTGTCACGGGAGTCAAACTTTCAGACTCTCGAAACCAGTTGCCACAACATATA TCTGGATATGATGCAGTTGTCCTTGCTGTGGGACATTCTGCGAGAGACGTCTACCAGATGCTTCTTTCTCACAATGTCGATCTAGTTCCCAAAGATTTTG CTGTTGGTTTGCGAATTGAACATCCTCAAGAACTGATAAACAACATACAGTATGCAAGCTTGGCAACTGATGTTAGAAGGGGACGGGGCAAAGTACCTGT TGCCGATTACAAGGTTGCAGGGGTTGTCAGCAGAGATGAGGATAACATTTCCTCGAATATGGAGCCAACGGATCGCAGTTGCTATTCCTTCTGCATGTGT CCTGGTGGACAGGTTGTTCTCACCGGTACAAATCCTAAAGAGCTATGCATCAACGGCATGTCATTCTCTCGTCGCGCTTCTAAGTGGGCAAATGCTGCAC TTGTTGTCAATGTCTCGAGGCAGGATTTCGAAGCATTAAACTTTCATGGACCACTTGCAGGAGTTGAGTTTCAGAGGGAATTTGAGCGAAGAGCGGCTGT AATGGGCGAGCAGGAATTTGTGGTCCCTGTGCAGACTGTTACTGACTTTCTGGATGACAAGTTATCAGGAACACCGTTGCCAACATCAAGCTATCGGTTA GGAGTCAAGGCATCCAATCTTCATGAGTTGTTTCCTTCGCATATAACAGAAGCACTGAAGCGTTCAATCGCGATGTTCAACCAAGAGTTACCAGGATTTA TTTCCAATGAAGCCCTTCTTCATGGTGTAGAGACGAGAACCAGTTCTCCTCTACAAATTCCACGTGGCAACGAGTCTTACGAGAGCGTATCATTGAGAGG GCTTTACCCTGTTGGGGAAGGAGCAGGCTATGCAGGTGGGATTGTGAGTGCAGCAGTTGATGGAATGCAAGCTGGATTTGCAGTGGCAAACAAGTTTGGT TTGTTACCTCAAGGCATTGACCTGGTCTTGGGGAAAGCAGAGCGGTCTGGATTCGTCAAGTACTAG
AA sequence Show only first row Show all	>Lus10022174 pacid=23156308 polypeptide=Lus10022174 locus=Lus10022174.g ID=Lus10022174.BGIv1.0 annot-version=v1.0 MPFLHSHSLSLTLHPLPSISATSNPNPYRFRTYATKQRILCAATKRTGKQRYPSEKKKLKQKRKETHREVDDKFVGTWRLSKLAVSIQDDPGKDFTSISD GLLREIAKAIKFPVASMLPAEAFSVVRKSFDARKVLKEPKFVYTVDMDVSKLVNLEPRTEDFISELDIKAGLIDHILEGRVTGDLISIIRNARKAEEHES FEGGGSASNGSARLVKSTSREKPKIAVVGGGPSGLFASLVLAELGADVTLIERGQPVEQRGRDIGALIVRRILESESNFCFGEVVSLPSPDIPCYLCFSG GAGTWSDGKLVTRIGRNSESVLAAMKTLVHFGAPENILVDGKPHLGTDRLIPLLCNFRQHLLELGVSIKFGTRVDDLIVENRSVTGVKLSDSRNQLPQHI SGYDAVVLAVGHSARDVYQMLLSHNVDLVPKDFAVGLRIEHPQELINNIQYASLATDVRRGRGKVPVADYKVAGVVSRDEDNISSNMEPTDRSCYSFCMC PGGQVVLTGTNPKELCINGMSFSRRASKWANAALVVNVSRQDFEALNFHGPLAGVEFQREFERRAAVMGEQEFVVPVQTVTDFLDDKLSGTPLPTSSYRL GVKASNLHELFPSHITEALKRSIAMFNQELPGFISNEALLHGVETRTSSPLQIPRGNESYESVSLRGLYPVGEGAGYAGGIVSAAVDGMQAGFAVANKFG LLPQGIDLVLGKAERSGFVKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	0	1
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	2.4	0.8682
AT1G73970			unknown protein		Lus10036972 [exp]	5.3	0.8422
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	5.5	0.8393
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	7.3	0.8539
AT4G38960	CO		B-box type zinc finger family ...		Lus10018076 [exp]	8.7	0.7615
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	8.9	0.7891
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	9.8	0.8281
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	10.6	0.8185
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026990 [exp]	11.0	0.8593
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	11.8	0.8218

Compare expression of checked genes

Lus10022174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.