Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022175 pacid=23156272 polypeptide=Lus10022175 locus=Lus10022175.g ID=Lus10022175.BGIv1.0 annot-version=v1.0 ATGCAGCCAGAGTTTGTTGATAACTATAAGCTAAACCAGGAAGCTGGTCCTATTCCTCCTTCGATAGCTGTGATTTCCTTTTGGTCGCGGTCGCCGGAAG GATGTGTTAACGTTAATATGGATGTTGCGATCCTTAGTGATCCGGGAATGAGCTCGGGGATGGTCCTAAGAGACGATACAGTTCAGCATTTGTGGAATTT TTTGCTCTACAACGGTTCAATATGGGTCGCGTGGATTCGAGTCCATCAACAGAGGGCGAATTCTCTGTTCCATACCCCTCGTGCTTCCATCTCATGGGCT TGGAAGTCTATCATGAAATCCTTGCATATTGTGATATGTTTCCTTACCCAGGACACTGATCGGAATGCGATGCACCGTTTTTCTGTTACGTTGGTGTGGA ATAACATTCGGGAGAAGCGTCCTTTGGTTCCATGGTTTGCTTTTGTTTGGAAAGCACGACCATTCATAAGTGCTCCTGGGGCTGAAGACCTCCCCCACCT GTTTGTTCATTTTTCGTTTGTTGTGGAAGTCCGAAAGGTCCTCTTCTCAGGTTTTCCTGCTTCTGCTTCATGGGAAGTCGATCTTGTTGTTTTTGGTGCT GCATTCCATTATGGCAGTGCTGTTTCGCGACAGGGAGATTGA
AA sequence Show only first row Show all	>Lus10022175 pacid=23156272 polypeptide=Lus10022175 locus=Lus10022175.g ID=Lus10022175.BGIv1.0 annot-version=v1.0 MQPEFVDNYKLNQEAGPIPPSIAVISFWSRSPEGCVNVNMDVAILSDPGMSSGMVLRDDTVQHLWNFLLYNGSIWVAWIRVHQQRANSLFHTPRASISWA WKSIMKSLHIVICFLTQDTDRNAMHRFSVTLVWNNIREKRPLVPWFAFVWKARPFISAPGAEDLPHLFVHFSFVVEVRKVLFSGFPASASWEVDLVVFGA AFHYGSAVSRQGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022175 [exp]	0	1
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10015870 [exp]	2.8	0.7728
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	8.1	0.7849
					Lus10030050 [exp]	11.4	0.7179
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	12.2	0.7902
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029601 [exp]	14.1	0.7881
AT3G05500			Rubber elongation factor prote...		Lus10031493 [exp]	16.7	0.7823
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	18.3	0.7801
AT1G09195			unknown protein		Lus10010931 [exp]	21.3	0.6978
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	28.1	0.7554
					Lus10007779 [exp]	28.8	0.7301

Compare expression of checked genes

Lus10022175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.