Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30710 267 / 1e-80 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 253 / 1e-75 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 194 / 2e-53 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 185 / 3e-50 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT5G43160 162 / 2e-45 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT3G60000 131 / 1e-32 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 130 / 3e-32 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT2G20815 111 / 5e-26 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 110 / 1e-25 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30740 61 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010780 [exp] 797 / 0 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 780 / 0 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10014636 [exp] 195 / 6e-55 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 196 / 4e-54 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 190 / 4e-52 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10007759 [exp] 138 / 2e-37 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 138 / 2e-34 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 133 / 8e-33 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039786 [exp] 131 / 4e-32 AT2G20815 218 / 3e-64 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181700 [exp] 295 / 3e-91 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 294 / 4e-91 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.014G017500 [exp] 211 / 1e-59 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 206 / 1e-57 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 194 / 2e-53 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 191 / 2e-52 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 140 / 9e-36 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 131 / 1e-32 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 121 / 1e-29 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 115 / 1e-26 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10022176 pacid=23156273 polypeptide=Lus10022176 locus=Lus10022176.g ID=Lus10022176.BGIv1.0 annot-version=v1.0 ATGGAAGTTCGAAATTCACCCAAGAGTTTAGGTTTGGATTCCACGAAACGCCTTCCTTTAGCTCCGGCCGAAAGGAACAGCAACGCGCGTCCGCCCCCAC CGCCTTTTTCAGCCGTGGCTCGCCGTCCTCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCACCGCCCCGAGGTTCCCGTCTCCGATCAT CTCCGCCAGAACGTCGTCATCACCTTCATCGCCGAAGAGAGCACAATCGGCTGAGCGCAGACGCGTGGCTCAATCTCCAACCCCAACGGCTGAGAGGCGG TGCGTGGCCCAATCTCCCACCCCAATTTCACCTCGAACCTCGACGCCGGTTAAAGATTCCTCAGTCGACGATAAGGTAACAACAACAGCCAGTATTTCTA ATAGGAGGCTCAGCATTGGTGGTAAGTTGCCGGAGGGTTTATGGCCGTCTACAATGAGAAGCCTTAGTGTGTCTTTTCAGTCTGATAGCATTTCAGTTGC TGTGAGCAAGAAGGAAAAGGAGAAGCCATTGATTAGTAGTAGAAGTAATAATGTAAGTAGTAATGTTGTATTGTCAAGTGATAGAACCCTAAAACCATCT TCAAATGTCGCAAAGATTCGTGTGTACTCTCCGAGGAGAAGCAGCCCTGTGAAAGGTAGGAGTGAGAATGCTAAACCATCATTAGTAGATAGTTTCCAAA CGAAGTTGATTGATCAGCATAGATGGCCAAGTAGGATAACTAGTGTGAAAGCTATGAACAAGAGTGTTGATCTTAGTGATTTTAAGTCAATGAGAGGGTT AGCAAGTTCCGTTGTTTCGATCGGGACTTCCACGCTGAAGAAGATGCCTGGACATGATGGCATTGGGGATGGTGGTAGTAGGCCGTCATTGCAGAAATCA GCTAGCGATGCTGCTACTAGAATACTATCTCCAAACGAAAAGCCCGGTATGAAGGCGTTTGACGAGGTTTTGGAGCGGTCGTCGAGGGCTGAGAAGTTGG TTTCGGCGCATTTGGCTGATAGGATGGCGTCTCTTCCCTCGGTGAGGACACATTCAGTGTCTAGTCCTAGGTCGCGTCCAGCTTCTCCAAGCAAGGTTTC GCTGAGTAGAGGTGGGAGTCCTTCTCGAACAAGACCATCAACTCCCACTTCTTCTCGGGGGGTTAGTCCATCTCGAGCTAGGACATCATCGTCGAGTCCA TTGTCATTCAGTTCGAACTCTGTGCTCAGTTTCGTAGCTGATTATAAGAGAGGGAAGAGGAGTGCTAGCTACCTTGAGGATGCTCATCAGTTGAGGCTAC TGCACAATCGGTACCTGCAATGGAGATTTGCTAATGCTCAACAGGAGGATGTTCTTTATGCTCAGAAAGTGAACACTGAGAGAGCTTTATGCGATGTTTG GAACGGCACATCATCTTTGTGGGATTCAGTAATTAGGAAGAGAATTGATCTACAAAAGCTGAAGCTGGAGCTTAAGCTAACTGCAATTTTAAATGGCCAG ATGGAATACCTGGAAGATTGGGGTTTAGTTGAGAGAGACCATGTAAGCTCTTTATCTGGAGCTGTAGATGATCTTGAGGCTAGCACTCTCCGAATTCCGT TAGCCAGAGGAGCAAAGGCTGATATAGAATCTCTAAAGCTTGCTGTTTGCTCGGCCGTCGATGTGATGCAGGCAATGGGATCTTCGATTTGTTATTTACT TTCCAAGGCCGAGGCAATGAACCAGTATGTTACAGATCTTGCCATTATTGCAGCACGAGAGAAATCAATACTTGCTGATTGCGAAAGTCTATTGGCATCA ACAGCAGCCATGCAGGTGGAAGAGGGCAGTATTAGGACTCATCTGATTCAAATGAGACAGATTCTGGAAAATCAAGCAATGTTGACTACAAGAACACATC AATGGTGGTCTTGA
AA sequence Show only first row Show all	>Lus10022176 pacid=23156273 polypeptide=Lus10022176 locus=Lus10022176.g ID=Lus10022176.BGIv1.0 annot-version=v1.0 MEVRNSPKSLGLDSTKRLPLAPAERNSNARPPPPPFSAVARRPRXXXXXXXXXXXXPTAPRFPSPIISARTSSSPSSPKRAQSAERRRVAQSPTPTAERR CVAQSPTPISPRTSTPVKDSSVDDKVTTTASISNRRLSIGGKLPEGLWPSTMRSLSVSFQSDSISVAVSKKEKEKPLISSRSNNVSSNVVLSSDRTLKPS SNVAKIRVYSPRRSSPVKGRSENAKPSLVDSFQTKLIDQHRWPSRITSVKAMNKSVDLSDFKSMRGLASSVVSIGTSTLKKMPGHDGIGDGGSRPSLQKS ASDAATRILSPNEKPGMKAFDEVLERSSRAEKLVSAHLADRMASLPSVRTHSVSSPRSRPASPSKVSLSRGGSPSRTRPSTPTSSRGVSPSRARTSSSSP LSFSSNSVLSFVADYKRGKRSASYLEDAHQLRLLHNRYLQWRFANAQQEDVLYAQKVNTERALCDVWNGTSSLWDSVIRKRIDLQKLKLELKLTAILNGQ MEYLEDWGLVERDHVSSLSGAVDDLEASTLRIPLARGAKADIESLKLAVCSAVDVMQAMGSSICYLLSKAEAMNQYVTDLAIIAAREKSILADCESLLAS TAAMQVEEGSIRTHLIQMRQILENQAMLTTRTHQWWS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	0	1
AT5G07620			Protein kinase superfamily pro...		Lus10032493 [exp]	2.0	0.8773
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	3.5	0.8483
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	3.5	0.8454
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	4.0	0.8865
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	5.5	0.8513
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	8.8	0.8387
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	9.8	0.8345
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	12.0	0.8321
AT5G25510			Protein phosphatase 2A regulat...		Lus10017752 [exp]	12.5	0.8329
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	15.9	0.8342

Compare expression of checked genes

Lus10022176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.