Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59650 137 / 5e-39 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006114 [exp] 168 / 7e-51 AT3G59650 204 / 2e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2) Lus10010559 [exp] 165 / 1e-49 AT3G59650 201 / 2e-68 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2) Lus10016942 [exp] 96 / 8e-23 AT3G17450 51 / 1e-07 hAT dimerisation domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G126200 [exp] 134 / 6e-38 AT3G59650 202 / 8e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF05047 [flax] [poplar] L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Representative CDS sequence Show only first row Show all	>Lus10022178 pacid=23156299 polypeptide=Lus10022178 locus=Lus10022178.g ID=Lus10022178.BGIv1.0 annot-version=v1.0 ATGGCGCAATCTAAAAGCCCAATAAGGCTCATGAAAGAAGAAGAAGCAGGCAGCTTCTCGAAACTCTCTCGCTTTCTCACTCTGCACCATCGCCCGATTT CCGACCGCCTCGCTAGAACTTGTTCTGTGGGAATTTCAGATGGCCCTAAGAGGCATTTGGCAGCTGAAAGCTGGTTGTTAGCTACAGTGATTGGGGTGGC AGCAGCAGAGGGATCAGGTAGGACCTTATTAGCTTTGATTGAACCAGTGCGAAGAAATTATCAGGAAGGGGCATTCATGGAGTCAAACCTTCCGACATTC AAAGCTGAGAATCCCCATCTGAAGGTGGAAACTGAACTCATTCGAGGCCAGCACCCGCACTTGAAGGCCTTTTACAAAAACAACAATGAAAGAGTGGTAT GCGTGAGTAACATGACTCCAGATGAAGTACTATTGCATGCTACCAGGCTAAGGAATGCATTGGGAAGAAAGGTGGTAAAACTTAAGACGAGACATGTTAC CAAACACCCAAGTGTACAAGCGATCGACGCCGAGCCTGCCACCGCCGTTCCTCACTCCTCCCTGCCGAAGCAAGGTGATTGCTTCATCTCCTCTTCTCTC TGTGTACGAAATTGGCAAATCGCTGTCATCCTCCTTCCATCTCCTCTCTGTGCAGCGATCGACGCCGAGTCTGCCACCGCCCGCCATTTTCACCCATCAT CACCAATCGACGTCGTCATCCTCCTTCCATCTCCTCTCTGTGCAGCGATCGACGCCAAGCCTGCCACCGCCCGCCGTTCTCACCCATCATCACCAATCGA CATGGTCATCCTCCTTCCATCTCCTCTCTGTGCAGCGATCGACGCCGAGCCTGCCACCGCCCGTCGTTCTCACCCATCATCACCAATCGACATGGTCATC CTCCTTCCATCTCCTCTCTGTGCAGCGATCGACGCCGAGTCTGCCACCGCCCGCCATTTTCACCCATCATCACCAATCGACGTCGTCATCCTCCTTCCAT TTCCTCTCTGTGCAGCGATCAACGCCGAGCCTGCCACCGCCCGTCGTTCTCACCCATCATCACCAATCGACATGGTCATCCTCCTTCCATCTCCTCTCTG TGCAGCGATCGACGCCGAGCCTGCCACCGCCCGTCGTTCTCACCCATCATCACCAATCGACATGGTCATCCTCCTTCCATCTCCTCTCTGTGCAGCGATC GACGCCGAGCCTGCCACCGCCGTTCCTCACTCCTCCCTGCCGAACCAAGGTGATTGCTTCATCTCCTCTTCTCTCTGTGTACGAAATTGGCAAATCGCTG CTTCATCTCCTAGTCCTCTATTTCTGTAA
AA sequence Show only first row Show all	>Lus10022178 pacid=23156299 polypeptide=Lus10022178 locus=Lus10022178.g ID=Lus10022178.BGIv1.0 annot-version=v1.0 MAQSKSPIRLMKEEEAGSFSKLSRFLTLHHRPISDRLARTCSVGISDGPKRHLAAESWLLATVIGVAAAEGSGRTLLALIEPVRRNYQEGAFMESNLPTF KAENPHLKVETELIRGQHPHLKAFYKNNNERVVCVSNMTPDEVLLHATRLRNALGRKVVKLKTRHVTKHPSVQAIDAEPATAVPHSSLPKQGDCFISSSL CVRNWQIAVILLPSPLCAAIDAESATARHFHPSSPIDVVILLPSPLCAAIDAKPATARRSHPSSPIDMVILLPSPLCAAIDAEPATARRSHPSSPIDMVI LLPSPLCAAIDAESATARHFHPSSPIDVVILLPFPLCAAINAEPATARRSHPSSPIDMVILLPSPLCAAIDAEPATARRSHPSSPIDMVILLPSPLCAAI DAEPATAVPHSSLPNQGDCFISSSLCVRNWQIAASSPSPLFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	0	1
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	3.5	0.8264
					Lus10022179 [exp]	5.6	0.7168
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	7.4	0.7945
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	8.9	0.7981
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000381 [exp]	9.5	0.7550
AT1G65000			unknown protein		Lus10026159 [exp]	10.1	0.6989
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10016287 [exp]	12.2	0.7835
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	13.3	0.7997
AT1G72490			unknown protein		Lus10013160 [exp]	13.4	0.7327
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	15.5	0.7640

Compare expression of checked genes

Lus10022178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.