Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 288 / 4e-88 Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 122 / 2e-29 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 115 / 2e-27 EFR EF-TU receptor (.1) AT3G47580 112 / 3e-26 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 108 / 4e-25 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 108 / 7e-25 Leucine-rich repeat protein kinase family protein (.1) AT4G08850 106 / 3e-24 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G39390 102 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT5G63710 100 / 1e-22 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 97 / 2e-21 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010772 [exp] 449 / 4e-150 AT2G24130 928 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030638 [exp] 125 / 1e-30 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 125 / 2e-30 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 123 / 8e-30 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 122 / 2e-29 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 119 / 2e-28 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037311 [exp] 118 / 3e-28 AT3G47570 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 118 / 4e-28 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030851 [exp] 115 / 2e-27 AT3G47570 748 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181200 [exp] 301 / 6e-93 AT2G24130 1186 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G103400 [exp] 298 / 1e-91 AT2G24130 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G184100 [exp] 191 / 4e-53 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G042500 [exp] 190 / 9e-53 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G037400 [exp] 140 / 7e-36 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 135 / 6e-34 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G114400 [exp] 128 / 1e-31 AT3G47570 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 128 / 1e-31 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G037400 [exp] 126 / 6e-31 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 125 / 1e-30 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022180 pacid=23156288 polypeptide=Lus10022180 locus=Lus10022180.g ID=Lus10022180.BGIv1.0 annot-version=v1.0 ATGGGTTCTACTCCTAGCCCACTATGTCAACCCAAATCGGGGATCCACCCTGGTGGTTTAGAGCCTCACGACTGCGGCTGTCTATTGGCCACGCACGTGC TTCACTCACGCCCGTTGTCTGCCATTCCTCTCTTGTTAAGTTCTTCGATTTCCGAGGAGACTTCCTTTGATGACTGGGAGGAGCGGCCTGCTGAACTCCT TCACAACGGACGTGCAGAGCTCGTCTTTCAGGTGGATGATCCCGCCTATGAGTTCTTTGCGACTTTGTACGTGGACCTCATTTTCGGGCGGACCCGGTCG ATGCTCATTTTCTCGATAGTAGAAAAGGTTTGCCACCTCTCCATTGATGATCTAGCTATCGTATGTGGCTTCTATGCCATGGAGAACAGGGCCACGGATT GGTTTCATTATTTTATCACTTTTACGGTCATCAACTCCGCTCTTCACTCCTGGCTCCAGCTATCTGGATTTGTCACGGAACTCAATTTCTCTTTCAATAT CTTCTCTGGGAATGTTTCGAACAAAGGGGCATTTTCGTCACTAACGGTGCAATCCTTCTTGGGAAACCATGGTCTTTGTGGCACAATACAAGGAATGAAT AGCTGCAAGAAGAGACATTCCAGTAACTCTTTCGTTTTGACTGTCATCGTCTCATTATTTGCTCTTCTTTCCCTTTGTATATTTGCCTACCGCTCAGTTT CCAAGTTCAGTCCCAGAAGTAAGTTTGGGATATTTGATCAAGAAGAGTTGGATGATGATGAGGAGAAAGGGAACAAAAATGATCTCAAGTATCCAAGAAT ATCCTACAGGCAACTCATTCAAGCTACTGGTGGGCTTTGTCCTTCAAACCTGATAGGATCAGACAGGTTTGGGAAGGTTTATAAGGGAGATTTTTATGAC AATACAAGGATAGCTGTAAAAGTAGTGTTGGATAGAAAGAGTGGAGCAGGACAAACGATCGTCAGGGGGGGTTTCAAAAGGGAAACCCAAGTTCTGAGGA TAATAAGGCATAGAAATCTGTTGATAAGCATTTGTCATGATGTTGCTGAAGCTTTAGCCTATCTGCATCATCATTCTCCTGTCAGAGTTGTGCACTGTGA TCTCAAGCCCAGCAACATTCTTCTGGATGATGACCTCAAAGCTTTGGTTACTGATTTTGGGATAGCCAAGTTGGTTAATGGTGCTGATGATCTCAAAGAT GATTCAGTGTCCTTTGAATCAACAGATGGCTTGTTGTGTGGATCCTTTGGCTACATAGCTCCTGACATGAATGATGAATCAATCAATCACCCAATTTGCA GCAATCATATATAA
AA sequence Show only first row Show all	>Lus10022180 pacid=23156288 polypeptide=Lus10022180 locus=Lus10022180.g ID=Lus10022180.BGIv1.0 annot-version=v1.0 MGSTPSPLCQPKSGIHPGGLEPHDCGCLLATHVLHSRPLSAIPLLLSSSISEETSFDDWEERPAELLHNGRAELVFQVDDPAYEFFATLYVDLIFGRTRS MLIFSIVEKVCHLSIDDLAIVCGFYAMENRATDWFHYFITFTVINSALHSWLQLSGFVTELNFSFNIFSGNVSNKGAFSSLTVQSFLGNHGLCGTIQGMN SCKKRHSSNSFVLTVIVSLFALLSLCIFAYRSVSKFSPRSKFGIFDQEELDDDEEKGNKNDLKYPRISYRQLIQATGGLCPSNLIGSDRFGKVYKGDFYD NTRIAVKVVLDRKSGAGQTIVRGGFKRETQVLRIIRHRNLLISICHDVAEALAYLHHHSPVRVVHCDLKPSNILLDDDLKALVTDFGIAKLVNGADDLKD DSVSFESTDGLLCGSFGYIAPDMNDESINHPICSNHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	0	1
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	1.4	0.8701
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10004227 [exp]	5.7	0.8673
AT5G66780			unknown protein		Lus10014313 [exp]	12.4	0.7862
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10034019 [exp]	16.1	0.7575
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	18.5	0.7238
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	28.3	0.8302
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10038429 [exp]	29.4	0.8358
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10020248 [exp]	35.2	0.8017
AT2G15220			Plant basic secretory protein ...		Lus10019803 [exp]	41.8	0.7438
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	81.4	0.7188

Compare expression of checked genes

Lus10022180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.