Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24120 1274 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) AT5G15700 1097 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1093 / 0 MGP3 male gametophyte defective 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010771 [exp] 1273 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1094 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1092 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 1091 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 1091 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1050 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 1030 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10010770 [exp] 585 / 0 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103300 [exp] 1395 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 1386 / 0 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.008G112800 [exp] 1130 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.010G136700 [exp] 1116 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.017G105801 [exp] 1092 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.004G111600 [exp] 1092 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10022181 pacid=23156304 polypeptide=Lus10022181 locus=Lus10022181.g ID=Lus10022181.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCAGCTCCATTCTCGACTTCCCACAGAGCTCCAATCCAATACTACTCACCATGGCCTCTCAAATCGTCAAAGCCCTACAGAAACCTCAACT TCCTCTTCAACAAATCTCCTCTATCTCCACTCTCAGGTTCCTTCTTACCACCACCTTCTTCTTCTTCGTTCCCTTCTTGCCTCAATCGCAAATCCCCCAG GAACCCACTTCTGCTAAACCCTCTACACGACTCCAGCCACGACCATCTCCTCGAAGACAGGGAGACCCTCGAGAATCTGATGAATTTGGAAGCTCCCAGA AGAGATAGGAGGAGAGTGTATATTGAAGACCCACCCTGGATTTCAGCTCTTGTCCTCAAAGGTATGCAGAAGTTAGCTAACAGGAAAGTTAGAGTTGCTT TTGATGACATTGAGAGGAGGAAGTATCATCTGTTAAGGAGGAGGCAGGTTAAGGAAGAGACGGAGGCTTGGGAGAGGGTGTCGGAGGAGTACAAGGAAAT GATTAGGGATATGTGTGAGAAGAAGCTGGCTCCTAATTTGCCTTACGTGAAAAATTTGTTCTTGGGTTGGTTTGAGCCTTTGAAGGAAGCCATTGAGACA GAGAAGAGAGTGCATAGGTCCAAGAGGTATAAGATGGCGTATTCCCAGCATATGGAGTCTTTGCCTTCCGATAAGATGGCGTTGATTGTTATGCATAAGT TGATGGGTTTGATGATGAGTGGTGGGAATGATGATGGATGTATCCAGCTTGTTCAGGCTGCTGTTCATGTTGGGACCGCCATAGAGCAGGAGGCCATGAT TCACACTTTCTTGGAGAAGGCCAAGAAGTGCCAAAGGAACAAGACATCAACTGATGATGAGGATGGTGCGGGGGCAGATAAGGAGATACTTAGGAGACGT ATTAAAGATTTGCTCAGGAGGAAAAAGCTAATGCAGGTGCAGAAGTTGGTGAAAACCGAAGAAATCAAACCTTGGGGGCGAGTTATACAGGCTAAAGTAT TGGGAGCTCGTCTGATACACCTATTGACTGAAGTAGCTTTTATACAAACTCCAGTTGATAAATTGACGGACACTCCGCCTGATGTCCGACCTGCCATTAG ACATAGATTCAAAAATTTGGCAAGGCGTCAAGGGCAAAAGATCTCGAGGAGGTATGGAGTTATTGAATGTGATCCCCTCATACTTGCAGGGCTTGATGGA TCTGCTAAGCATATTGTGGTTCCCTATTTCCCAATGTTGATACCCCCGAAGAAATGGAAAGGTTATAATAAAGGTGGGCATCTGTTCTTGCCTTCTTATG TCATACGTACTCATGGATCAAGGAGCCAAGAAGAGGCTTTTAAGAGGGCATCTACAAACCAAATGCAGAGAGTGTTTGAGGCCTTGGATACACTTGGGAG CACTAAATGGAGAGTGAATAGACGACTACTTGATGTGGTAGAAACCATATGGGAAAATGGTGGCAATATCGCTGGCTTGGTGGATCGGGCAGATGTGCCC TTACCAGAGAAACCAAACACAGAAGATCTAACAGAACTTCAGCAATGGAAATGGAATGTAAGGAAGGCAAGAAAGATGAACCGAGAGAGGCATTCAGAAC GTTGTGATACTGAACTTAAACTTTCTGTAGCTCAGAAACTGAAAGATGAGGAAGGCTTCTATTATCCTCACAACCTAGATTTCCGTGGTAGAGCATATCC AATGCATCCACATTTGAATCATCTGAGTTCTGACCTCTGTCGAGGAGTTCTTGAATTCGCAGAAGGGCGGCCTTTGGGGAAGTCTGGGTTAAGTTGGCTA AAAATACATTTGGCGAACTTATATGGTGGTGGGATACAAAAGATGGCTCATGATGCACGACTAGGGTTCATTGAAAATCACCTACCGGAGATATTTGATT CGGCAGAAAATCCTATCGATGGAAAACGCTGGTGGTTAACTGCTGAAGATCCTTTCCAGTGCTTGGCTGCTTGTATTGATCTCTCCGAAGCTTTAAAGAG CTCATCACCTCATTCTACCATCTCTTACCTACCAATTCATCAGGATGGCTCATGTAATGGTTTACAACACTATGCAGCCTTGGGAAGAAATACTTCTTCT CATTTCCCTCCTTTTCTCCAGCCGGAAGCAGCAGCAGTTAATTTGGTTAGTGGAGAGAAACCGGCTGATGTTTATTCTGAGATTGCTGTGAGAGTACTTG AAATAATGAAAAGAGACAGCAGTAAAGACCCTGCTGCCTTTCCAAATGCCTTATTAGCTAAGGCTTTAGTGAGTCAGGTAGACAGGAAATTAGTTAAACA AACAGTGATGACTTCTGTCTATGGTGTTACATTTATCGGGGCACGTGAACAAATTAAAAAAAGATTAGAGGAGAAGGGCGTGTTTACAGATGATAGACTT CTGTTCAGAGCATCTTGTTATGCTGCTAAGGTCACACTTGCTGCCCTAGGCGAATTATTCCAAGCTGCACGTAAAATCATGGGTTGGCTTGGTGATTGTG CAAAGGTCATTGCTTCAGATGGCCAACCTGTGCGGTGGACGACTCCACTAGGTCTTCCCATCGTGCAACCATACTTCAAAAACAAACGACAAGTTATACA TACTTCGCTCCAAGTTTTGGCCCTGCAGCATCAGGGTAGCTCAGTGCAGGGTAGGAAACAGAGAACTGCGTTTCCACCAAATTTTGTGCACTCGCTCGAT GGGTCACACATGATGCTGACAGCTCTGGCTTGTCGAGATGCCAATTTACGCTTTGCAGGAGTACATGATTCATTCTGGACGCATGCTTGTGATGTGGATT TGTTGAACCGGCTGCTACGTGAAAAGTTCGTGGAGCTCTATACTATGCCAATACTCGAAAAATTGGAGGAAAGCTTCCACACAACATATCCAGGACTGGA GTTCCCTCCTCTCCCTGAGACAGGGACCTTCGACTTGAACGAAGTTATAAAATCAGAGTATTTCTTCAATTGA
AA sequence Show only first row Show all	>Lus10022181 pacid=23156304 polypeptide=Lus10022181 locus=Lus10022181.g ID=Lus10022181.BGIv1.0 annot-version=v1.0 MASAAPFSTSHRAPIQYYSPWPLKSSKPYRNLNFLFNKSPLSPLSGSFLPPPSSSSFPSCLNRKSPRNPLLLNPLHDSSHDHLLEDRETLENLMNLEAPR RDRRRVYIEDPPWISALVLKGMQKLANRKVRVAFDDIERRKYHLLRRRQVKEETEAWERVSEEYKEMIRDMCEKKLAPNLPYVKNLFLGWFEPLKEAIET EKRVHRSKRYKMAYSQHMESLPSDKMALIVMHKLMGLMMSGGNDDGCIQLVQAAVHVGTAIEQEAMIHTFLEKAKKCQRNKTSTDDEDGAGADKEILRRR IKDLLRRKKLMQVQKLVKTEEIKPWGRVIQAKVLGARLIHLLTEVAFIQTPVDKLTDTPPDVRPAIRHRFKNLARRQGQKISRRYGVIECDPLILAGLDG SAKHIVVPYFPMLIPPKKWKGYNKGGHLFLPSYVIRTHGSRSQEEAFKRASTNQMQRVFEALDTLGSTKWRVNRRLLDVVETIWENGGNIAGLVDRADVP LPEKPNTEDLTELQQWKWNVRKARKMNRERHSERCDTELKLSVAQKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLSWL KIHLANLYGGGIQKMAHDARLGFIENHLPEIFDSAENPIDGKRWWLTAEDPFQCLAACIDLSEALKSSSPHSTISYLPIHQDGSCNGLQHYAALGRNTSS HFPPFLQPEAAAVNLVSGEKPADVYSEIAVRVLEIMKRDSSKDPAAFPNALLAKALVSQVDRKLVKQTVMTSVYGVTFIGAREQIKKRLEEKGVFTDDRL LFRASCYAAKVTLAALGELFQAARKIMGWLGDCAKVIASDGQPVRWTTPLGLPIVQPYFKNKRQVIHTSLQVLALQHQGSSVQGRKQRTAFPPNFVHSLD GSHMMLTALACRDANLRFAGVHDSFWTHACDVDLLNRLLREKFVELYTMPILEKLEESFHTTYPGLEFPPLPETGTFDLNEVIKSEYFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10022181 [exp]	0	1
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	4.2	0.9298
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10033496 [exp]	5.5	0.9092
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Lus10014663 [exp]	6.3	0.8885
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	6.6	0.9201
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	9.5	0.9053
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	11.0	0.9043
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	11.0	0.9075
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	12.1	0.9143
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	13.3	0.9118
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	14.4	0.9032

Compare expression of checked genes

Lus10022181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.