Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40400 155 / 1e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 92 / 7e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64580 91 / 1e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 89 / 5e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09680 89 / 6e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G03560 89 / 1e-20 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 88 / 1e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 84 / 3e-19 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 84 / 3e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16710 84 / 4e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013077 [exp] 309 / 2e-103 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022262 [exp] 272 / 3e-93 AT5G40400 248 / 6e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 92 / 5e-22 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 92 / 6e-22 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 91 / 1e-21 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 90 / 4e-21 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 84 / 3e-19 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 84 / 4e-19 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 84 / 6e-19 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G071600 [exp] 213 / 2e-66 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 91 / 1e-21 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G090400 [exp] 91 / 1e-21 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 91 / 2e-21 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 89 / 5e-21 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 89 / 7e-21 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G068400 [exp] 87 / 1e-20 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 88 / 2e-20 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 88 / 2e-20 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 87 / 3e-20 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022182 pacid=23156309 polypeptide=Lus10022182 locus=Lus10022182.g ID=Lus10022182.BGIv1.0 annot-version=v1.0 ATGGTTCACAAAGGTTTTAATCCGGACATGGTGGCGTACAACACTTTAATCTGTGGCTACTGCAAAAAAGGAAGGATTCAGGAGGCCAAGTCATTGCTGT ATCAGATGATAGGGAACGGAATCTGTGCCGATAGTTTCACTTGTCGAGTTTTGATTCGAGCACATGTGGAAGACGGCAGGTTGATGTCGGCTCTGAATTT AGCAGTGGAGCTTGGGAGATTTGGTGCATCAATTTCTTGCATTGTTTATGATTATCTAATAGTTTGCCTGTGTGAAGAGGATAAGCCGTTTGCCGCGAAG AGTCTATTAAAAAGGAAGTGTAAGGATGGTTATAAACCAGATATGCTAATCTACGAAAAACTCATCGAGTCTCTGAGCACAATCAACAGTGTAGCTGATG CATTGCTTCTCAAGTCTGAGATGATTTGTAAGAATGGGAAACCCCTCAGTGTTATGGCATACAAAGCTCTGATCGCCGGTTTGTGTAGAGCAGTCAGAAG TGCCGAAGCGGAATCTTTGATCGATTAG
AA sequence Show only first row Show all	>Lus10022182 pacid=23156309 polypeptide=Lus10022182 locus=Lus10022182.g ID=Lus10022182.BGIv1.0 annot-version=v1.0 MVHKGFNPDMVAYNTLICGYCKKGRIQEAKSLLYQMIGNGICADSFTCRVLIRAHVEDGRLMSALNLAVELGRFGASISCIVYDYLIVCLCEEDKPFAAK SLLKRKCKDGYKPDMLIYEKLIESLSTINSVADALLLKSEMICKNGKPLSVMAYKALIAGLCRAVRSAEAESLID

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10022182 [exp]	0	1
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	7.3	0.6612
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	9.1	0.6539
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	11.7	0.6453
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10003202 [exp]	12.6	0.6221
					Lus10004437 [exp]	13.4	0.6383
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	15.0	0.6383
					Lus10039674 [exp]	16.4	0.6383
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	17.7	0.6383
					Lus10021739 [exp]	19.0	0.6383
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	19.5	0.5973

Compare expression of checked genes

Lus10022182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.