Plant FIBer expression Database

Lus10022184 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30810 227 / 2e-71 SCPL29 serine carboxypeptidase-like 29 (.1)
AT3G07990 168 / 5e-49 SCPL27 serine carboxypeptidase-like 27 (.1)
AT2G35780 167 / 1e-48 SCPL26 serine carboxypeptidase-like 26 (.1)
AT4G30610 163 / 7e-47 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
AT2G24010 160 / 3e-46 SCPL23 serine carboxypeptidase-like 23 (.1)
AT2G24000 158 / 4e-45 SCPL22 serine carboxypeptidase-like 22 (.1.2)
AT3G02110 157 / 2e-44 SCPL25 serine carboxypeptidase-like 25 (.1)
AT2G35770 141 / 9e-39 SCPL28 serine carboxypeptidase-like 28 (.1)
AT5G23210 132 / 1e-35 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
AT3G63470 132 / 3e-35 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040387
[exp]
189 / 7e-57 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1)
Lus10023505
[exp]
186 / 6e-56 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Lus10041412
[exp]
172 / 5e-50 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1)
Lus10010767
[exp]
160 / 2e-48 AT4G30810 209 / 5e-65 serine carboxypeptidase-like 29 (.1)
Lus10015382
[exp]
164 / 3e-47 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
Lus10019954
[exp]
160 / 1e-45 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Lus10015489
[exp]
159 / 2e-45 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Lus10010190
[exp]
134 / 5e-36 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Lus10017391
[exp]
130 / 2e-34 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G103100
[exp]
238 / 1e-75 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
Potri.010G220100
[exp]
190 / 3e-57 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
Potri.008G041800
[exp]
190 / 3e-57 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1)
Potri.006G183200
[exp]
172 / 2e-50 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Potri.018G105700
[exp]
168 / 8e-49 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Potri.004G120100
[exp]
159 / 2e-45 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1)
Potri.008G041700
[exp]
157 / 8e-45 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1)
Potri.010G220200
[exp]
157 / 1e-44 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1)
Potri.017G094100
[exp]
155 / 5e-44 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1)
Potri.001G261100
[exp]
141 / 2e-38 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF00450 Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence
>Lus10022184 pacid=23156292 polypeptide=Lus10022184 locus=Lus10022184.g ID=Lus10022184.BGIv1.0 annot-version=v1.0
ATGGGCAATCTCAGTTGGGTAATTGGGCTCCTGAAATTGTTGTCCATCGCCATAGTAGCTGCAGCCGATTTTTGTGTTGCTCGAGCAGCAGTAGACAAAG
TAATGGGGCTATCAGCTGAGGACTCCCTAAAGTTCCTCATCAATTGGTTTGAGCGCTTACCACAATATAAAGTAAGAGAATTTTATGTTACAGGAGAAAG
CTATGCAGGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTGGGCATAACTCAGCAACAAAAGTCCCAGATAATTAACTTGAAAGGATTCATGATCCAT
GCAACAGATGCCTGCAATCGGCTTCTTGATATTGTAGACCAAGAAGTCGGCCACATTGATCCATATAGTGCATTCACTCCTACATGCAGTCTTAATGTCA
GCCAATCCGGCCAGTCGCTCAGAAGGAGGCTCTTAGGGAAAGGTATGATCCTTGTAGACAAGTACACTACTGTTTATTTCAACTTTCCTGAGGTTCAACA
GGCACTCCATGTTTCTAGACAAGTTGCACCAAGTAAATGGGCTACTTTCAGATTGTTTTTGCGCTGTGACTTGGTGTATGACCATTGTCAAGATTCTTCG
ATGTCAGTGCTTGATGTCTATGAAGAGCTCATTCAAGCAGGGATTCGTATTTGGGTCTTCAGGTACTTCAAACCCATGGGTTTACCTACGGTTGGAGGAT
GGACTCAAGAATACAATGTACTGACCTTTGTTGTTGTCCGTGGAACTGGACATGAAGTTCCTCTGCACAAACGCAAACTAGCTTTCACATTGGCTAACTC
CTTCTTAGCTACCTCATCCATACCCGATTTTTAA
AA sequence
>Lus10022184 pacid=23156292 polypeptide=Lus10022184 locus=Lus10022184.g ID=Lus10022184.BGIv1.0 annot-version=v1.0
MGNLSWVIGLLKLLSIAIVAAADFCVARAAVDKVMGLSAEDSLKFLINWFERLPQYKVREFYVTGESYAGHYVPQLSQAIVGITQQQKSQIINLKGFMIH
ATDACNRLLDIVDQEVGHIDPYSAFTPTCSLNVSQSGQSLRRRLLGKGMILVDKYTTVYFNFPEVQQALHVSRQVAPSKWATFRLFLRCDLVYDHCQDSS
MSVLDVYEELIQAGIRIWVFRYFKPMGLPTVGGWTQEYNVLTFVVVRGTGHEVPLHKRKLAFTLANSFLATSSIPDF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07990 SCPL27 serine carboxypeptidase-like 2... Lus10022184
[exp]
0 1

Lus10022184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.