Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43430 397 / 1e-141 ETFBETA electron transfer flavoprotein beta (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021198 [exp] 465 / 1e-168 AT5G43430 408 / 6e-146 electron transfer flavoprotein beta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165800 [exp] 435 / 9e-157 AT5G43430 429 / 2e-154 electron transfer flavoprotein beta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01012 [flax] [poplar] ETF Electron transfer flavoprotein domain
Representative CDS sequence Show only first row Show all	>Lus10022185 pacid=23139480 polypeptide=Lus10022185 locus=Lus10022185.g ID=Lus10022185.BGIv1.0 annot-version=v1.0 ATGAAGATAATGGTGGCCGTAAAACGAGTGATCGACTACGCCGTCAAAATCAGAGTCAAACCCGACAAGAGTGGTGTAGAGACTCAAAACGTCAAGATGT CCATGAACCCATTCTGCGAGATAGCTCTTGAAGAGGCCCTTCGAATCAAAGAAGCCGGATTAGCTTCTGAAGTTGTCGCCGTCAGTATGGGCCCTAAACA GTCCGTCGATACTCTGAGGACGGGTCTCGCCATGGGTGCCGATCGAGGGATTCACGTCGAGACCACTGACCATTTGTTTCCTCTAGCTGTTGCTAAGCTT CTCAAGGCTCTTGTGGAGGTGGAGAAGCCTGGTCTGATTATTTTGGGGAAACAGGCCATTGATGATGACTGTAACCAAACTGGCCAAATGGTGGCTGGCC TGCTTAATTGGCCTCAGGGGACATTTGCTTCCAAGGTCTTGCTTGACATGGAGAAACAGGAAGTAACCGTGGAACGAGAAGTGGATGGTGGTCTTGAGAC TGTCTGTTTAAACTTACCTGCAGTGATCACCACTGATCTAAGACTGAACCAACCAAGGTATGCCACGCTACCAAATATTATGAAAGCGAAATCAAAGCCG ATCAAGAAATACACACCGGAGGAGCTGAATGTAGAAACGAAGTCAGATGTAGAGGTTGTTGAAGTCACGGAACCTCCAAAGAGAAAGGCAGGGGTGCTTG TTTCTTCGGTGGACGAGTTGATAGACAAGCTTAAAAATGAAGCTCATGTCATCTAA
AA sequence Show only first row Show all	>Lus10022185 pacid=23139480 polypeptide=Lus10022185 locus=Lus10022185.g ID=Lus10022185.BGIv1.0 annot-version=v1.0 MKIMVAVKRVIDYAVKIRVKPDKSGVETQNVKMSMNPFCEIALEEALRIKEAGLASEVVAVSMGPKQSVDTLRTGLAMGADRGIHVETTDHLFPLAVAKL LKALVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVLLDMEKQEVTVEREVDGGLETVCLNLPAVITTDLRLNQPRYATLPNIMKAKSKP IKKYTPEELNVETKSDVEVVEVTEPPKRKAGVLVSSVDELIDKLKNEAHVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	2.2	0.9387
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	2.4	0.9156
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	2.4	0.9079
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	2.8	0.9149
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	3.2	0.9041
					Lus10007667 [exp]	3.5	0.9035
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	3.9	0.9142
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	4.2	0.9277
AT4G10970			unknown protein		Lus10032393 [exp]	5.9	0.8805
AT1G10890			unknown protein		Lus10043141 [exp]	6.2	0.8959

Compare expression of checked genes

Lus10022185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.