Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08300 234 / 3e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 231 / 1e-72 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 227 / 3e-71 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 218 / 9e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 215 / 2e-66 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 212 / 2e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 211 / 3e-65 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 210 / 6e-65 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 200 / 8e-61 WAT1 Walls Are Thin 1 (.1.2) AT5G13670 199 / 2e-60 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021201 [exp] 367 / 9e-127 AT1G21890 186 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 251 / 8e-81 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 249 / 8e-80 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 234 / 7e-74 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 231 / 1e-72 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 230 / 5e-72 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 228 / 3e-71 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 230 / 8e-71 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 210 / 1e-64 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165600 [exp] 513 / 0 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 382 / 3e-132 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 247 / 8e-79 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 244 / 1e-77 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 237 / 1e-74 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 228 / 6e-72 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 229 / 9e-72 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 225 / 5e-70 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 223 / 2e-69 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 214 / 2e-66 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10022187 pacid=23139347 polypeptide=Lus10022187 locus=Lus10022187.g ID=Lus10022187.BGIv1.0 annot-version=v1.0 ATGAAAGGTGGTGGGTGTAAGTTTGGAGACACTTGCAGAAAGTTCAGGCCACACTTGCTGATGGTTCTGGCACAGCTTTGCTATACTTTTCTCTACTTCA TCACTGAAGCTTCCTTCAAACATGGCATGAATCCTAATGTTTACGTAACTTATCGTCACGTCGTGTCAGCTGTGGTCATGTTCCCTATTGCCTATTTCAT TGAAAGAAAACAAAGGCCCAAAATGACATTTGCCCTTTTCATGGAGATCTTCCTTCTGGCTCTCTTAGGGGTGGGTTTGACTTTGAACATGTACTTTGTG AGTTTGACATACACTTCTCCAACTTTTGTTGCTTCAATGGTGAATACCATAGCTTCCTTGACATTTGTTATTGCAGTTGTACTAAGGTTGGAGACACTTG ACCTCCGAAATCCCCGAGGGGTGGCGAAAATTCTAGGGACGTTGATTTCTTTGTCCGGTGTAATGACTATGACATTGTACAGAGGTCCCATCATTAAGCA TTTGTGGCCTCCGTTGATTCAGTTGCACGGGACAATGTCCAATAACCATGGGAGCTGGCTGATAGGTTCCATTCTTACAGTTGCAAGCTGCATAACATGG TCTTTATGGTACATTATGCAGGCGTTAACATTGAAGAGATATCCTGCTCAATTATCACTAACAGCTTGGATGAGCGCTGTGGGAGCAGTACAATCAGCTG TCTTCACAGTTATTATAGAACATAAAAAGTCTGATTGGACAATTGGTTTCAATGTAGATTTCTGGTCTACCATCTATGGTGGAGTGGTGATCTCAGGAAT GGTGGTGTTCATTCAGCTGTGGTGCACAGAGCAAAAAGGGCCAGTCTTTGTGACCACCTTCAACCCTCTTTCCACAATTTTAGTGGCAGTTCTTGCTTAC TTCATTATGGGAGAAAAGCTTTACTTGGGAAGTATCATAGGAGCTGTAATTGTGATCATTGGCTTATACTTACTTCTCTGGGGGAAAGAAGCAGATCACC AGCCTAGTAAGAAATCTGAACAGCAAACTGTTTCAGGAGCTGTTAGTGAGGGAAATGAAACTACTGATATACAGATAAGTACTTCAGCTGTATCTAAGGT TTAG
AA sequence Show only first row Show all	>Lus10022187 pacid=23139347 polypeptide=Lus10022187 locus=Lus10022187.g ID=Lus10022187.BGIv1.0 annot-version=v1.0 MKGGGCKFGDTCRKFRPHLLMVLAQLCYTFLYFITEASFKHGMNPNVYVTYRHVVSAVVMFPIAYFIERKQRPKMTFALFMEIFLLALLGVGLTLNMYFV SLTYTSPTFVASMVNTIASLTFVIAVVLRLETLDLRNPRGVAKILGTLISLSGVMTMTLYRGPIIKHLWPPLIQLHGTMSNNHGSWLIGSILTVASCITW SLWYIMQALTLKRYPAQLSLTAWMSAVGAVQSAVFTVIIEHKKSDWTIGFNVDFWSTIYGGVVISGMVVFIQLWCTEQKGPVFVTTFNPLSTILVAVLAY FIMGEKLYLGSIIGAVIVIIGLYLLLWGKEADHQPSKKSEQQTVSGAVSEGNETTDIQISTSAVSKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	0	1
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	2.0	0.8199
AT5G53190		SWEET3, AtSWEET...	Nodulin MtN3 family protein (....		Lus10014932 [exp]	2.4	0.8236
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	3.0	0.7999
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10040705 [exp]	4.4	0.7009
AT3G12320			unknown protein		Lus10024129 [exp]	7.5	0.7337
AT3G54500			unknown protein		Lus10039553 [exp]	8.0	0.7274
					Lus10018645 [exp]	12.8	0.7224
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	15.1	0.7280
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	15.4	0.7044
AT3G27030			unknown protein		Lus10041550 [exp]	15.8	0.7314

Compare expression of checked genes

Lus10022187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.