Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23200 158 / 2e-50 Uncharacterised protein family (UPF0497) (.1) AT3G53850 122 / 2e-36 Uncharacterised protein family (UPF0497) (.1) AT5G02060 115 / 3e-33 Uncharacterised protein family (UPF0497) (.1) AT2G28370 96 / 1e-25 Uncharacterised protein family (UPF0497) (.1) AT2G37200 82 / 5e-20 Uncharacterised protein family (UPF0497) (.1) AT4G37235 55 / 4e-10 Uncharacterised protein family (UPF0497) (.1) AT1G49405 51 / 2e-08 Uncharacterised protein family (UPF0497) (.1) AT3G50810 49 / 1e-07 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021202 [exp] 190 / 5e-59 AT1G06620 202 / 2e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004698 [exp] 124 / 4e-37 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 121 / 7e-33 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10041312 [exp] 97 / 6e-26 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10037399 [exp] 97 / 6e-26 AT2G28370 259 / 4e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 97 / 1e-25 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1) Lus10024355 [exp] 94 / 2e-25 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1) Lus10010881 [exp] 94 / 6e-25 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 94 / 1e-24 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165500 [exp] 188 / 3e-62 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 181 / 3e-59 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 130 / 2e-39 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 119 / 6e-35 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.009G014600 [exp] 91 / 1e-23 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 87 / 3e-22 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 84 / 7e-21 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 82 / 3e-20 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 78 / 1e-18 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10022188 pacid=23139436 polypeptide=Lus10022188 locus=Lus10022188.g ID=Lus10022188.BGIv1.0 annot-version=v1.0 ATGAGGGATTTTGCTGGAACTCCGGGGACACTCACCGCCCTTTTCCTCCGGATATCTCAATGTGTTTTTGCTGCTGCCTCAATTACTGCCATGTCCACAA CTTCCAACTTCTTCAGTTTCACTGCTTTCTGCTACTTAATCGCATCAATGGGTTTGCAAGTGATCTGGAGCTTTGGACTTGCACTATTAGATGCATATGC CTTGCTGAGAGGGAAAATTCTGCACAACTCTCTATTGGTCAGCCTATTTGCAGTGGGAGACTGGGTGACAGCAACTTTGTCTCTTGCTGCGGCTTCTGCT TCTGCGGGCATCACCGTACTTCTTTTTCATGACTTGGGACATTGCGGTCTTGTAGGGGAATGTCAAAAGTACCAAATGGCAGTTGGGTTGGCGTTTCTGA GCTGGGTTACAGTCGCAACATCTTCAATCATAATGCTTTGGTTAATGGCTCAAGGTTAG
AA sequence Show only first row Show all	>Lus10022188 pacid=23139436 polypeptide=Lus10022188 locus=Lus10022188.g ID=Lus10022188.BGIv1.0 annot-version=v1.0 MRDFAGTPGTLTALFLRISQCVFAAASITAMSTTSNFFSFTAFCYLIASMGLQVIWSFGLALLDAYALLRGKILHNSLLVSLFAVGDWVTATLSLAAASA SAGITVLLFHDLGHCGLVGECQKYQMAVGLAFLSWVTVATSSIIMLWLMAQG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	0	1
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	3.2	0.9769
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10042789 [exp]	5.6	0.9508
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	6.6	0.9740
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	7.5	0.9731
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	7.7	0.9717
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	7.7	0.9726
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	11.6	0.9583
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	12.3	0.9570
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	13.0	0.9697
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	13.0	0.9618

Compare expression of checked genes

Lus10022188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.