Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 418 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 412 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 400 / 3e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 393 / 2e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59530 388 / 2e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G25450 385 / 3e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 380 / 3e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 377 / 5e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 374 / 1e-128 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023499 [exp] 415 / 9e-145 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040382 [exp] 403 / 3e-140 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040380 [exp] 402 / 9e-140 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 396 / 3e-137 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 389 / 1e-134 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 387 / 7e-134 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 387 / 1e-133 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 384 / 8e-133 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 383 / 3e-132 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156200 [exp] 511 / 0 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 480 / 1e-170 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 439 / 2e-154 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 434 / 2e-152 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 405 / 3e-141 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073232 [exp] 389 / 1e-134 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 334 / 3e-113 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 314 / 4e-105 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 313 / 2e-104 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 311 / 3e-104 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022189 pacid=23139352 polypeptide=Lus10022189 locus=Lus10022189.g ID=Lus10022189.BGIv1.0 annot-version=v1.0 ATGGGAACCGAACCCGCCGCTTTTGATCGGAACATCGCACTCAAGGCCTTCGACGACACAAAAGCAGGGGTCAAAGGCCTCGTTGACGCTCAAGTTTCAC AAATTCCGACCATATTTCTTCACTCTCAGTCCAACACAGCTTCCGTCGCCAAGACAACTACGGAAGACTCTGTACCGCCCGGCGCCATCCCGACTATTGA CTTGAAAGGTATCGACCAAGACCTGGATCTCCGCGGCCAAGTAATCGGCCTGATAAGAGAAGCTTGCCGAAGCCGAGGATTCTTCCAGGTGATCAATCAT GGAATCCCCGTAACCCTCATGGATAAGATGCTTGATGGAGTTAGGGATTTCCACGAACAGGATACTCAAGTCAAGAAAACGTTCTACACCAGGGACTTCA CTAAAACGGTGACGTATAACTGCAATTTCGATTTCTATAAGGCGCCGGCGGCTAATTGGAGGGATACCATGAGCTGTGTCATGGCACCCCGCCCTCCAAA CCCTGAAGAACTCCCCCAAGTTTGCAGGGATGTAATGGTTGATTACTCCAACCAAGTGATGAAATTGGCAACCGAGCTTTTTGAATTGCTGTCTGAAGCA TTAGGACTGGATCCCAGTTACCTTAACGAGATTGGTTGCTCGGAAGGGCTGTTCTTTGTGGGGCATTACTACCCGGCTTGTCCTGAACCGGAATTGACAA TGGGAACTAGCAGTCATTCCGACAGTGGATTTCTTACAGTGCTTCTACAAGACCAAATCGGTGGTCTTCAGGTTCTCGCTGATGAGCACTGGGTTGATGT CAAACCCAATCCTTCTGCGCTTGTGATCAACCTTGGAGACCTTTTGCAGTTAATATCGAATGACATATTCAAGAGCTCCCAGCACAGGGTGGTTGCGAAG TCCATAGGTCCCCGAATTTCGGTGGCTTGTTTTCTAAGACAGCAGCTGCCTCCGGAGAATGCTTCGAGGATTTATGGTCCAATTAAGGAGCTCTTGTCGG AAGAAAATCCTCCAGTTTACAGGGGAGTAACCGTGAATGAGTTTGTGGCACATTACTATGAAAAAGGGCTTAACGGAGTCTCCGCTCTGGAGCATTTCAG GGTCTGA
AA sequence Show only first row Show all	>Lus10022189 pacid=23139352 polypeptide=Lus10022189 locus=Lus10022189.g ID=Lus10022189.BGIv1.0 annot-version=v1.0 MGTEPAAFDRNIALKAFDDTKAGVKGLVDAQVSQIPTIFLHSQSNTASVAKTTTEDSVPPGAIPTIDLKGIDQDLDLRGQVIGLIREACRSRGFFQVINH GIPVTLMDKMLDGVRDFHEQDTQVKKTFYTRDFTKTVTYNCNFDFYKAPAANWRDTMSCVMAPRPPNPEELPQVCRDVMVDYSNQVMKLATELFELLSEA LGLDPSYLNEIGCSEGLFFVGHYYPACPEPELTMGTSSHSDSGFLTVLLQDQIGGLQVLADEHWVDVKPNPSALVINLGDLLQLISNDIFKSSQHRVVAK SIGPRISVACFLRQQLPPENASRIYGPIKELLSEENPPVYRGVTVNEFVAHYYEKGLNGVSALEHFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	3.7	0.9195
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	3.9	0.9217
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	5.5	0.9166
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	5.9	0.9113
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	7.7	0.8994
AT4G21865			unknown protein		Lus10014471 [exp]	8.9	0.8903
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10016764 [exp]	9.7	0.8886
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	9.8	0.9087
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10036260 [exp]	10.4	0.8724
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Lus10007764 [exp]	11.0	0.8847

Compare expression of checked genes

Lus10022189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.