Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 323 / 5e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 322 / 9e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 317 / 2e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 314 / 5e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06650 308 / 7e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 305 / 6e-103 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 300 / 7e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G25450 300 / 4e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 296 / 2e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 295 / 6e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040382 [exp] 418 / 3e-147 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040380 [exp] 409 / 1e-143 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023499 [exp] 402 / 6e-141 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022189 [exp] 330 / 9e-113 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 314 / 2e-106 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 313 / 3e-106 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 313 / 4e-106 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 312 / 1e-105 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 311 / 3e-105 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165400 [exp] 376 / 7e-131 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 343 / 5e-118 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073166 [exp] 329 / 2e-112 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 320 / 9e-109 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 306 / 2e-103 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 296 / 2e-99 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 281 / 2e-93 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 255 / 8e-83 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 253 / 2e-82 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 241 / 5e-78 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022190 pacid=23139450 polypeptide=Lus10022190 locus=Lus10022190.g ID=Lus10022190.BGIv1.0 annot-version=v1.0 ATGGTTAATACCATTTCAGCCGGAACCGGAGCAGATTCTGAGAGGAAGAGCGAACTGAAGGCTTTTGACGACACCAAATCCGGCGTGAAAGGCCTAGTCG ATGCTGGGATCACACAGCTCCCTCGTATATTCAAGCACGATCCATCCGTAATCAACGAACAACCAGTCACCGATGCAACAAAACTCATACCAGTCATAGA CATGGGAGGCCTTCCGGCTTCACGTTCAGCTGCAATCGAGAAAGTTCGCGACGCTTGTTCAGAATGGGGGTTCTTTCAGGTAATCAACCACGGAATCCCA GATTCACTTCTGGAGAGCGCACTCGATGGAATTAGAAAGTTTCACGAGCAGGACAGTGATGCCAAGAAAGACTTGTACACCAGGGACGAGACTAGAAAGG TCATGTTCAACACCAACTTCGATTTTTACCAAACTTCATCAGCTAATTGGAGGGACTCTCTGTACTGCCTTATGGCTCCTGTCCCTGCACACCCTGACGA GCTTCCTCCCATTTGCAGGGATGTAGTAATCAACTACTCAAAGGAAGTGATGAAATTGGGGCTAACCATTTTCGAGTTGATGTCGGAAGCTCTCGGATTA GAACCAAACCACCTCAGACACATGGGATGCAGCGATGGACTGTATATGATAGGTCATTACTACCCAGAATGCCCAGAGCCAGAATCGACACTTGGATTGA GCAAGCACACGGATAGTGGGTTTCTGACAGTGCTTCTCCAAGACCAAACGGGCGGACTTCAGGTTCTCCACCAAGGCCAATGGGTCGATATTCAACCCAT CCCTGGATCCTTAGTAGTCAACTTAGGAGACATGTCCCAGGCGAGTTGTTTTAAATTAAAGATTCCATCTTTTGTGATATTAATCGTATCTTGA
AA sequence Show only first row Show all	>Lus10022190 pacid=23139450 polypeptide=Lus10022190 locus=Lus10022190.g ID=Lus10022190.BGIv1.0 annot-version=v1.0 MVNTISAGTGADSERKSELKAFDDTKSGVKGLVDAGITQLPRIFKHDPSVINEQPVTDATKLIPVIDMGGLPASRSAAIEKVRDACSEWGFFQVINHGIP DSLLESALDGIRKFHEQDSDAKKDLYTRDETRKVMFNTNFDFYQTSSANWRDSLYCLMAPVPAHPDELPPICRDVVINYSKEVMKLGLTIFELMSEALGL EPNHLRHMGCSDGLYMIGHYYPECPEPESTLGLSKHTDSGFLTVLLQDQTGGLQVLHQGQWVDIQPIPGSLVVNLGDMSQASCFKLKIPSFVILIVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	1.4	0.9718
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	6.9	0.9666
AT5G41810			unknown protein		Lus10003901 [exp]	7.5	0.9693
AT2G39855			unknown protein		Lus10004678 [exp]	8.9	0.9666
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	8.9	0.9611
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	9.0	0.9677
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	9.2	0.9666
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	9.8	0.9672
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	10.2	0.9331
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	10.3	0.9329

Compare expression of checked genes

Lus10022190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.