Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 454 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 432 / 8e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 427 / 2e-149 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 426 / 2e-149 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 422 / 1e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59540 414 / 1e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G61400 407 / 1e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 405 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 403 / 2e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022192 [exp] 628 / 0 AT5G43440 372 / 1e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022195 [exp] 485 / 1e-172 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 484 / 3e-172 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 483 / 7e-172 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 480 / 2e-170 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 478 / 9e-170 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 472 / 1e-167 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 469 / 2e-166 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 468 / 6e-166 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 480 / 7e-171 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 480 / 1e-170 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 478 / 1e-169 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 423 / 4e-148 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 411 / 2e-143 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 381 / 1e-131 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 353 / 1e-120 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 338 / 1e-114 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 337 / 4e-114 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 336 / 8e-114 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022191 pacid=23139353 polypeptide=Lus10022191 locus=Lus10022191.g ID=Lus10022191.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGCATGTTGCTGAACTCAGAGACCGACCGGCTCGCACAGCTGAAGGCGTTCGATGCGACCAAGGCCGGAGTGAAAGGTCTGGTTGACGCGG GAGTGAAAGAAATCCCATCACTCTTCCATACACCACCTCATCTCCTCGACAACAGATCATCGTCATCCGACAAGAAGAACAACTTCACTTTCCCAATCAT TGACCTCGAAGGTGTGGCCACCGATCCGGTCAAGCGCAAGGAGATCGTTGAGAAAGTCAGGGATGCTTCCGCAACTTGGGGATTTTTCGAAGTTCTCAAC CATGGTGTCCCTATCAACGTCTTGGAAGAGATGAAATCAGGTGTCAAGAGATTCTACGAGCAAGATCTTGAAGAGAAGAAAGAATTCTTCACACGTGACT ATACTAGGAAGATTGTTTACAACAGTAACTTTGACTTGTACACTGGTCAGGTCACCAACTGGAGAGACACCACTGTCTTCTATATGGCTCCTGATCCTCC CAAACCTGAAGAGTTGCCTGCTGCCAATAGGGAGATCCTGATTGAATACTCCAAAGAAATGTTGAACATGGGTTACTTGATCTTTGAGCTTTTGTCGGAG GCTTTAGGCCTTGAACCAAATTACTTGAGAAACAAAGAGTGCTTGATGGGACACAACTTTGTGTGTCATTACTACCCACCTTGTCCTCAACCAGACCTTA CTTTGGGAGCAAGCAAGCATGCCGACACTGACTTCATGACCATTCTCTTACAAGATCATGTTGGTGGCCTTCAAGTTCTTCATCAAGATCAGTGGGTTGA TGTCCCTCCATTGCCTGGATCTCTAGTCATCAACGTCGGAGATCTTTTGCAGTTGATGTCCAATGACAAACTCCTAAGTGTCGAGCATCGGGTTCTCGCA AATCCCACCACTGGACCTAGGATATCCGTGGCGTGCTTTTTCAGTACTGGTATGCTACCAAATCCTACAAAGTATGAACCCATTAAGGAACTCTTATCCG AAGACAATCCTCCCAAATACCGAGCTACTACCGTCTCTGAATATGTTACCTATGTTACTAATAAAGGCCTCGATGGAAAATCTCCTCTCCTCCATTTCAA GCTCTAA
AA sequence Show only first row Show all	>Lus10022191 pacid=23139353 polypeptide=Lus10022191 locus=Lus10022191.g ID=Lus10022191.BGIv1.0 annot-version=v1.0 MASSMLLNSETDRLAQLKAFDATKAGVKGLVDAGVKEIPSLFHTPPHLLDNRSSSSDKKNNFTFPIIDLEGVATDPVKRKEIVEKVRDASATWGFFEVLN HGVPINVLEEMKSGVKRFYEQDLEEKKEFFTRDYTRKIVYNSNFDLYTGQVTNWRDTTVFYMAPDPPKPEELPAANREILIEYSKEMLNMGYLIFELLSE ALGLEPNYLRNKECLMGHNFVCHYYPPCPQPDLTLGASKHADTDFMTILLQDHVGGLQVLHQDQWVDVPPLPGSLVINVGDLLQLMSNDKLLSVEHRVLA NPTTGPRISVACFFSTGMLPNPTKYEPIKELLSEDNPPKYRATTVSEYVTYVTNKGLDGKSPLLHFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029369 [exp]	1.0	0.9863
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	4.0	0.9822
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	4.2	0.9811
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	4.5	0.9773
AT2G18210			unknown protein		Lus10028324 [exp]	12.0	0.9728
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	13.0	0.9785
AT3G62650			unknown protein		Lus10017613 [exp]	14.1	0.9739
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10035333 [exp]	14.8	0.9600
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	15.3	0.9693
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	15.3	0.9589

Compare expression of checked genes

Lus10022191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.