Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 369 / 2e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 350 / 2e-119 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 348 / 2e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 348 / 2e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 345 / 4e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 342 / 6e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 337 / 9e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 335 / 5e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 332 / 9e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G43450 325 / 4e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022191 [exp] 628 / 0 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 395 / 2e-137 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 394 / 4e-137 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 392 / 2e-136 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 392 / 3e-136 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 388 / 1e-134 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 382 / 2e-132 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 382 / 2e-132 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 379 / 3e-131 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073166 [exp] 390 / 6e-136 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 384 / 4e-133 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 381 / 2e-132 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 339 / 9e-116 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 333 / 2e-113 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 302 / 4e-101 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 292 / 7e-97 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 291 / 1e-96 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 286 / 8e-95 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 282 / 2e-93 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022192 pacid=23139452 polypeptide=Lus10022192 locus=Lus10022192.g ID=Lus10022192.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGCATGTTGCTGAACTCAGAGACCGACCGGCTCGCACAGCTGAAGGCGTTTGATGCGACCAAGGCCGGAGTGAAAGGGCTGGTTGACGCGG GAGTGAAAGAAATCCCATCACTCTTCCACACACCACCTCATCTCCTCGACAACAGATCATCGTCATCCGACAAGAAGAACAACTTCACTTTCCCAATCAT TGACCTCGAAGGTGTGGCCACCGATCCGGTCAAGCGCAAGGAGATCGTTGAGAAAGTCAGGGATGCTTCCGCAACTTGGGGATTTTTCGAAGTTCTCAAC CATGGTGTCCCTATCAACGTCTTGGAAGAGATGAAATCAGGTGTCAAGAGATTCTACGAGCAAGATCTTGAAGAGAAGAAAGAATTCTTTTTACGTATAT TCTGCAGGGAGATCCTGATTGAATATTCCAAAGAAATGTTGAACATGGGTTACTTGATCTTTGAGCTTTTGTCGGAGGCTTTAGGCCTTGAACCAAATTA CTTGAGAAACAAAGAGTGCTTGATGGGACACAACTTTGTGTGTCATTACTACCCACCTTGTCCTCAACCAGACCTTACTTTGGGAGCAAGCAAGCATGCC GACACTGACTTCATGACCATTCTCTTACAAGATCATGTCGGTGGGTGTTTAGGTCTTTCTCGCGGTGGTCTTCAAGTTCTTCATCAAGATCAGTGGGTTG ATGTCCCTCCATTGCCTGGATCTTTGGTCATCAACGTCGGAGATCTGTTGCAGTTGATGTCCAATGACAAACTCCTAAGTGTCGAGCATCGGGTTCTCGC AAATCCCACCACCGGACCTAGGATATCCGTGGCGTGCTTTTTCAGTACCGGTATGCTACCAAATCCTACAAAGTATGAACCCATTAAGGAACTCTTATCC GAAGACAATCCTGCCAAGTACCGGGCTACTACCGTCTCTGAATATGTCACCTATGTTACTAATAAGGGCCTCGACGGAAAATCTCCTCTCCTCCATTTCA AACTCTAA
AA sequence Show only first row Show all	>Lus10022192 pacid=23139452 polypeptide=Lus10022192 locus=Lus10022192.g ID=Lus10022192.BGIv1.0 annot-version=v1.0 MASSMLLNSETDRLAQLKAFDATKAGVKGLVDAGVKEIPSLFHTPPHLLDNRSSSSDKKNNFTFPIIDLEGVATDPVKRKEIVEKVRDASATWGFFEVLN HGVPINVLEEMKSGVKRFYEQDLEEKKEFFLRIFCREILIEYSKEMLNMGYLIFELLSEALGLEPNYLRNKECLMGHNFVCHYYPPCPQPDLTLGASKHA DTDFMTILLQDHVGGCLGLSRGGLQVLHQDQWVDVPPLPGSLVINVGDLLQLMSNDKLLSVEHRVLANPTTGPRISVACFFSTGMLPNPTKYEPIKELLS EDNPAKYRATTVSEYVTYVTNKGLDGKSPLLHFKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	1.4	0.9956
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	3.5	0.9944
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	3.9	0.9933
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	4.6	0.9942
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	4.9	0.9940
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	9.5	0.9880
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	10.1	0.9882
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	10.2	0.9888
					Lus10014508 [exp]	10.2	0.9919
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	10.6	0.9890

Compare expression of checked genes

Lus10022192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.