Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 423 / 4e-148 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 402 / 1e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 393 / 3e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30840 389 / 1e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 385 / 3e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 381 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 379 / 9e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 376 / 9e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 375 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G61400 369 / 7e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027586 [exp] 712 / 0 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001103 [exp] 565 / 0 AT1G06620 427 / 2e-149 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 460 / 2e-162 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 457 / 2e-161 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 455 / 1e-160 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 453 / 4e-160 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 451 / 5e-159 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 442 / 7e-156 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 442 / 2e-155 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 461 / 6e-163 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 440 / 8e-155 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 427 / 2e-149 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 373 / 2e-128 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 366 / 1e-125 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 365 / 3e-125 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 331 / 6e-112 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 315 / 9e-106 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 313 / 9e-105 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 311 / 4e-104 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022193 pacid=23139398 polypeptide=Lus10022193 locus=Lus10022193.g ID=Lus10022193.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCGTACGATCGACTCGCGGAGTTGAAATCCTTTGACGAAACCAAAGCAGGGGTCAAAGGACTCGTCGACTCAGGAATCAATCACCTCCCTC GTATCTTCCACGCGCCGCCTCATCTCCTCGACAACATCCCACCCTCCACCGCCCTTACAACTGATCATCCCGATTTCACCTTCCCGATCATAGACCTGGA AGGCGGCATAGTCACTCAAATCCAAGATCCAATCAAGCGCCAGGAGATAGTGGATAAAGTCAGGGATGCCTCAAAGCAATCTGGGTTTTTCCAAATCGTC AACCACGGGATCCCGTTAACCGTCCTTGAAGAAATGAAATCAGGGGTTCGCAGGTTTCACGAGCAGGACGTGGAGCAGAGGCGGAAATTCTACACCCGCG ATTTCAACGCCAGGATCGTTTACAACAGCAACTTCGACCTCTACACGGCGCCATCGGCTAACTGGAGGGACACCGTATCTTTTAATATGGCTCCAAACCC TCCTAATCCCGACCAGTTGCCCGCCGTCTGTGATGAAATTGTGGCGGAGTATTCTGGGCAAGTTGCAAAATTGGGGGATTTGTTGTTTGAGTTGCTGTCG GAAGCTTTGGGTTTAGAATCCAACTGCTTGAAGGATTTGGATTGTGGGAAGGGGATTCAGGTTGTGTGTCATTACTATCCGGCATGTCCTCAGCCTGAGC TTACACTGGGAGCAACTAAGCATGCTGATAACGACTTCATCACCATTCTTCTACAAGACCATATCGGAGGCCTGCAGGTTCTTCGTCATGGCCAGTGGGT TGACGTGCCTTCGATACCGGGAGCGTTTGTGATCAATATTGGAGATTTTCTACAGCTGGTTTCGAATGATGAGTTTGTAAGTGTGGAGCACAGAGTAGTA GCGAATAGCAAGGGGCCGAGAATATCTGTTGCAAGTTTGTTTGGGACTTACCTACATCCGAACCCAAGAAAGTATGGGCCGATCAAGGAGCTGTTATCGA ACGAGAATCCGCCCAAGTACAGGGAAACTACAACTGCAGAATATGTCATATGTGGAAACAACAAGGGACTTGATGGGACTTCTACTCTGTTGCAGTTCAA GATCTGA
AA sequence Show only first row Show all	>Lus10022193 pacid=23139398 polypeptide=Lus10022193 locus=Lus10022193.g ID=Lus10022193.BGIv1.0 annot-version=v1.0 MAASYDRLAELKSFDETKAGVKGLVDSGINHLPRIFHAPPHLLDNIPPSTALTTDHPDFTFPIIDLEGGIVTQIQDPIKRQEIVDKVRDASKQSGFFQIV NHGIPLTVLEEMKSGVRRFHEQDVEQRRKFYTRDFNARIVYNSNFDLYTAPSANWRDTVSFNMAPNPPNPDQLPAVCDEIVAEYSGQVAKLGDLLFELLS EALGLESNCLKDLDCGKGIQVVCHYYPACPQPELTLGATKHADNDFITILLQDHIGGLQVLRHGQWVDVPSIPGAFVINIGDFLQLVSNDEFVSVEHRVV ANSKGPRISVASLFGTYLHPNPRKYGPIKELLSNENPPKYRETTTAEYVICGNNKGLDGTSTLLQFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	0	1
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	1.0	0.9065
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	2.4	0.8926
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	4.2	0.8579
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	4.6	0.8615
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	4.9	0.8821
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	5.5	0.8852
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	6.9	0.8582
AT5G58375			Methyltransferase-related prot...		Lus10042227 [exp]	7.7	0.8640
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	8.8	0.8486
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	9.7	0.8222

Compare expression of checked genes

Lus10022193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.