Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21540 66 / 2e-11 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020051 [exp] 295 / 4e-99 AT4G21390 45 / 5e-05 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 79 / 9e-16 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 64 / 1e-10 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 45 / 7e-05 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 43 / 0.0003 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10023903 [exp] 0 / 1 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 0 / 1 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033802 [exp] 0 / 1 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121100 [exp] 56 / 3e-08 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.004G027800 [exp] 54 / 1e-07 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 49 / 3e-06 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 49 / 4e-06 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 45 / 7e-05 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022194 pacid=23139488 polypeptide=Lus10022194 locus=Lus10022194.g ID=Lus10022194.BGIv1.0 annot-version=v1.0 ATGTTGGTAACCCTGCTACTTCAGAGAAGTTTTTTTGCATTTCGTACACTATGGCCTGATGAAAAGGTACGAGCCTCCAGCTTCATTCGGGGTTATAGCG GCGAGTCATACATAGCTTACGACAGCTCCGGCAAGTACCTGCTAGCTTCGGCACTTGAGAAGCTTGGAGTTTGGCACGTCGGACAAGGAATCTGCTCTAC GACCCTAGAGCCTTCTTCACTTCTCGCGCCGGACCTTCTCTTGCTCACGTACATAGCATCCTCTGCTACTTCTCTGGTACATGAACTGTTCTGCGGTACA ACAAGAATGGTGCTCAGCAAAATATACAGAAATTCTAGCCAAGCGAGTGATGGTGCTGGGGCTGTTTTGCTCATGATTTCAATGCAAAAAGGAGCTACCT TTCATTGGAGTGTTAAGTTATGCCCTCCGACCATCAAAAGCTCAAGTTGTACCATAAATCTTGCTAAATATGGGATCTGTGATGAATCGTGCCGGGAATC TCACGTCAGCCTGGAGGTGTTGAGGAGGAATAGTAATCGGATTTCGTGCGATTCGGTCTCGACTCAGCCGTCAGCTGAGTGCCAATGGTACGATTTCGCT TTGAAATCTGAGACCTGTGACGAATTGGGATCTCCCAAGTGTAGGTGGAATTGGTTTGCTGGCTGCTGCAGGATTACACCGTTGGTTTGTGCCGGACGAC ACGGCAGCAACGAGTTTACAGGGTTCAGAGGTGGGAAGTTGCTGGATTTGGCGAATTTACGACAACTATGGTTGGAGAAGGATTCGTGCAGGACAATTCC CTTCACGCGGGTAAGAATCGTCATCAGTGCTACGCAGATGTTGGTCATCAGTCCTGCCCTTTCCAAGATTTCACCCATGGTAACACTACAAGAAAAGCGT GATTTCGTGTCGTGGATCAACCGGAGCGCTGTGATAAATGGCATCGACCGGTTCTCGGAGATATTAAATTCAATGTTGATGGTGCCATTTCCCAGCAACA AGCTCGATCGTACAGTGGTGCAGTCATCTGGGATGAGACGAGCTCGTTCATCGCGTCAAGACAACGACACTTTCCAGGGTTTCGAGATGGTAGGGAGAGC GAGGCGTTGGCCTTGCTAG
AA sequence Show only first row Show all	>Lus10022194 pacid=23139488 polypeptide=Lus10022194 locus=Lus10022194.g ID=Lus10022194.BGIv1.0 annot-version=v1.0 MLVTLLLQRSFFAFRTLWPDEKVRASSFIRGYSGESYIAYDSSGKYLLASALEKLGVWHVGQGICSTTLEPSSLLAPDLLLLTYIASSATSLVHELFCGT TRMVLSKIYRNSSQASDGAGAVLLMISMQKGATFHWSVKLCPPTIKSSSCTINLAKYGICDESCRESHVSLEVLRRNSNRISCDSVSTQPSAECQWYDFA LKSETCDELGSPKCRWNWFAGCCRITPLVCAGRHGSNEFTGFRGGKLLDLANLRQLWLEKDSCRTIPFTRVRIVISATQMLVISPALSKISPMVTLQEKR DFVSWINRSAVINGIDRFSEILNSMLMVPFPSNKLDRTVVQSSGMRRARSSRQDNDTFQGFEMVGRARRWPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	0	1
					Lus10002465 [exp]	1.0	0.9652
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	2.8	0.9626
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	4.5	0.9527
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10011445 [exp]	5.8	0.9307
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	6.3	0.9457
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	6.3	0.9440
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	6.7	0.9545
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	7.4	0.9437
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	7.7	0.9529
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	10.9	0.9398

Compare expression of checked genes

Lus10022194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.