Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 422 / 1e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 422 / 1e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G04350 416 / 1e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 397 / 4e-138 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 393 / 2e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06650 393 / 3e-136 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 388 / 2e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30840 385 / 4e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04380 382 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027585 [exp] 748 / 0 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 614 / 0 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 583 / 0 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 580 / 0 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 506 / 2e-180 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 491 / 5e-175 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 491 / 6e-175 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 489 / 6e-174 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 480 / 1e-170 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 461 / 3e-163 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 452 / 9e-160 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 438 / 3e-154 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 407 / 7e-142 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 398 / 2e-138 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 390 / 3e-135 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 352 / 4e-120 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 348 / 1e-118 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 339 / 6e-115 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 332 / 4e-112 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022195 pacid=23139417 polypeptide=Lus10022195 locus=Lus10022195.g ID=Lus10022195.BGIv1.0 annot-version=v1.0 ATGGCAATAACACCCACCCAGGAGCAGGATCCAGCTTCTTACGATAGGCTCGCAGACCTGAAGGCATTCGACGAAACCAAAGCCGGAGTCAAAGGCCTAG TCGACGCTGGAATCACTGAGCTCCCTCGTATATTCAAGGCACCTCCTCATCTTCTGGACAACAAACCACCAAGCTTTTCATCCCAAGACCCGAACTTCAT TTTCCCAATCATAGACCTGGAAGGTGCGGCCAAAGACCCGGAGAAGAGGAAGCAAATTGTTCACCAAGTGAAAGAAGCATCTTCCAACTGGGGATTTTTC CAAGTGGTGAATCATGGAATTCCACTCAGCGTGTTGGATGAGATGAAGGCTGGTGTTCGCAGGTTTCACGAGCAGGATGTCGAGGTGAAGAAGCAATTCT ATACCCGTGACGTTGTTACCAAAAAGATCATTTACAACAGCAACTTCGATCTCTACACCGGAGCCTTTACCAATTGGAGGGACTCTGTTCTGTTCAATAT GGCTCCGGATCCTCTCTCCCCTGATGAATATCCAGCTTGTTGCAGAGATATCTTGCTTGAATATTCGAATGGAGTGGCGGAACTCGGACACTTACTTTTC CAATTGCTGTCAGAGGCTTTGGGGTTGGCTTCGAATCGTCTGATAGAAATGGAATGTACAAAGGGACTTAACTTGTCATGCCATTACTATCCGGCATGTC CAGAGCCAGAACTGACGATGGGAGCATGCAAACATACTGACAACGACTTCATTACAGTGCTTCTCCAAGACCATAGTGGAGGCCTCCAAGTTCTTCACAA AGACCAATGGGTTGATATTCCGCCCATGCCGGATGCTTTAGTGGTCAACCTTGGAGATTTACTCCAGCTAATATCGAACGACAAATTTATAAGTGCGGAG CATAGGGTGGTATCACAAAACGTCGGGCCAAGAGTATCTATTGCATCTTTCTTCAACACTGGTTTTACAGAGAATCAAATTAAATATGGACCCATTGAGG AGCTTTTATCAGAAAATGAACCTCCAAAATATAGGTATACTACATTAACTGAGTATAATACTCGCTTCTTCAGTAAAGGCCTTCACGGGACTTCCGCGTT GCTTCATTTTAAGATTTAA
AA sequence Show only first row Show all	>Lus10022195 pacid=23139417 polypeptide=Lus10022195 locus=Lus10022195.g ID=Lus10022195.BGIv1.0 annot-version=v1.0 MAITPTQEQDPASYDRLADLKAFDETKAGVKGLVDAGITELPRIFKAPPHLLDNKPPSFSSQDPNFIFPIIDLEGAAKDPEKRKQIVHQVKEASSNWGFF QVVNHGIPLSVLDEMKAGVRRFHEQDVEVKKQFYTRDVVTKKIIYNSNFDLYTGAFTNWRDSVLFNMAPDPLSPDEYPACCRDILLEYSNGVAELGHLLF QLLSEALGLASNRLIEMECTKGLNLSCHYYPACPEPELTMGACKHTDNDFITVLLQDHSGGLQVLHKDQWVDIPPMPDALVVNLGDLLQLISNDKFISAE HRVVSQNVGPRVSIASFFNTGFTENQIKYGPIEELLSENEPPKYRYTTLTEYNTRFFSKGLHGTSALLHFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	0	1
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10018947 [exp]	1.4	0.9413
AT4G10300			RmlC-like cupins superfamily p...		Lus10037245 [exp]	2.4	0.9340
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	3.6	0.9455
					Lus10028488 [exp]	4.0	0.9321
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	7.5	0.9410
AT1G18010			Major facilitator superfamily ...		Lus10006288 [exp]	8.0	0.9211
AT1G76360			Protein kinase superfamily pro...		Lus10030743 [exp]	8.3	0.9169
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	9.1	0.9090
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	11.2	0.9078
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10017067 [exp]	12.1	0.8976

Compare expression of checked genes

Lus10022195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.