Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59530 381 / 7e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 375 / 3e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 373 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 370 / 1e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 369 / 5e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 367 / 3e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 362 / 3e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G06650 361 / 7e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06645 353 / 1e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G43440 344 / 3e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021203 [exp] 617 / 0 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 502 / 2e-179 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 498 / 7e-178 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 498 / 2e-177 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 414 / 9e-145 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 414 / 2e-144 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 413 / 2e-144 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027586 [exp] 412 / 8e-144 AT1G06620 449 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 411 / 2e-143 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073300 [exp] 405 / 4e-141 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 405 / 4e-141 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 382 / 4e-132 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 364 / 5e-125 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G165400 [exp] 352 / 2e-120 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 348 / 6e-119 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.017G135800 [exp] 317 / 3e-106 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 309 / 1e-103 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 309 / 2e-103 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 287 / 1e-94 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022196 pacid=23139381 polypeptide=Lus10022196 locus=Lus10022196.g ID=Lus10022196.BGIv1.0 annot-version=v1.0 ATGGAAGATGCAGCTTACGATAGGCTTTCCGAATTGAAGGCTTTCGACGGGACGAAATCCGGAGTGAAGGGCCTCTCTGACGCCGGAGTTACAGAGCTTC CTCGTATCTTCAAGGCACCCCTTCATCTGCTAGACAACAGCCCGCCGACATTTTCACCCGACGACCCGGACTTCATTTTCCCCGTCATAGATTTGGCCGC CGCTGCACGAGATGACAAGCGTAAGCAGATTGTTGACCAAGTGAGGGACGCATCTTCCAAATGGGGATTTTTCCAAGTGGTGAATCATGGAATTCCAGAT CGTGTTTTGGAGGAAATGAAAGCTGGGGTTCGCAGGTTCCACGAGCAGGATGTCGAGGTGAAGAAGGAATTCTATACACGTGACGTTGTCGGCAAGAAGA TTGTTTACAACTGTAACTTCGATCTCTATACTGGAGCTTTTACCAACTGGAGGGACACTGTCCTGTTTCGTATGGCTCCGGATCCTCCCTCCCCTGACCA ATTTCCGCCTTGTTGCAGAGAAATCCTGCTTGAATATTCAAAGCAAGTGCAGAAACTGGGAGACTTGCTTCTCCAATTGATATCAGAGGCATTGGGTCTG GCGTCTACTCGCCTAAAAGAACTGGAATGCACAAAGGGGCTTAATGTGATATGTCACTACTACCCTCCATGTCCACAGCCAGAACTTACAATGGGGACTG GCAGGCATGCCGACGACGACTTCCTAACGGTGCTTCTCCAAGACAATAGTGGAGGCCTCCAAGTCCTTCATAAGGGCCAATGGGTTGATGTGTCTCCTTT GCCTGGTGCTTTGGTCATCAATCTTGGAGATCTACTCCAGTTAATTTCGAACGACAAATTTATAAGTGCGGAGCATAGAGTGCTAGCGCAAAATACTGGG CCAAGAGTATCCATTGCGTCGTTCGTGCACACTCCATTTACGCCATTGCCAGTGAACTACGGCCCGCTTGAAGAGTTGGTATCAGAAAATGACCCGCCTA AATATAGGCGCACTACAGCGGCAGAGTTTAATGCTCACTACTTCAGTAAAGGCCTTAACGGGACTTCTGCTTTGGCTCATTTTAAGCTCTAA
AA sequence Show only first row Show all	>Lus10022196 pacid=23139381 polypeptide=Lus10022196 locus=Lus10022196.g ID=Lus10022196.BGIv1.0 annot-version=v1.0 MEDAAYDRLSELKAFDGTKSGVKGLSDAGVTELPRIFKAPLHLLDNSPPTFSPDDPDFIFPVIDLAAAARDDKRKQIVDQVRDASSKWGFFQVVNHGIPD RVLEEMKAGVRRFHEQDVEVKKEFYTRDVVGKKIVYNCNFDLYTGAFTNWRDTVLFRMAPDPPSPDQFPPCCREILLEYSKQVQKLGDLLLQLISEALGL ASTRLKELECTKGLNVICHYYPPCPQPELTMGTGRHADDDFLTVLLQDNSGGLQVLHKGQWVDVSPLPGALVINLGDLLQLISNDKFISAEHRVLAQNTG PRVSIASFVHTPFTPLPVNYGPLEELVSENDPPKYRRTTAAEFNAHYFSKGLNGTSALAHFKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	0	1
AT2G42760			unknown protein		Lus10019924 [exp]	1.4	0.9307
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	1.7	0.9399
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	2.0	0.9202
					Lus10017791 [exp]	2.2	0.9135
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	3.0	0.9284
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	3.5	0.8702
					Lus10010299 [exp]	4.5	0.8757
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	4.7	0.8712
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	6.6	0.8245
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	9.5	0.8541

Compare expression of checked genes

Lus10022196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.