Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 383 / 2e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 376 / 6e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 365 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 361 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 357 / 2e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30830 350 / 1e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 347 / 3e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06645 346 / 5e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 345 / 1e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G04380 337 / 1e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037796 [exp] 435 / 5e-153 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 432 / 1e-151 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 431 / 2e-151 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 430 / 6e-151 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 428 / 3e-150 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 426 / 2e-149 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 425 / 4e-149 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017080 [exp] 422 / 5e-148 AT1G06620 440 / 3e-155 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 416 / 3e-145 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 433 / 3e-152 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 420 / 5e-147 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 416 / 2e-145 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 369 / 6e-127 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G156200 [exp] 368 / 2e-126 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073100 [exp] 339 / 4e-115 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 316 / 4e-106 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 290 / 7e-96 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 280 / 4e-92 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 279 / 1e-91 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10022197 pacid=23139430 polypeptide=Lus10022197 locus=Lus10022197.g ID=Lus10022197.BGIv1.0 annot-version=v1.0 ATGAAAGGCGTCAGCAACCTTGATTACGATCGGTTAGTGGAACTGAAGGCTTTCGACGAAACCAAAGCTGGAGTCAAAGGCCTCGCCGATGCAGGAATCA CTCAACTTCCTCCCTTCTTCCACATACCACCTCATTTACTCGACTCCAGACCCACCGCTTCAGACTTCACCTTCCCAATCATCGATCTCCAAGGCGTTCT GGGCCCGAACAGAAAGCAGATCGTTGACAAAGTCAGGGATGCATCTTCCAATTGGGGATTCTTTCAGGTCCTCAATCACGGCATTCCCGACAGTCTACTG GATGAGATGAAAGCTGGAGTGGCTAGGTTTTACGAGCAGGATGTTGAGCTGAAGAAGCCATTCTTCGAGCGCGATGACCCCACCAAGAAGATCGTCTACA ACAGCAATTTCGATCTGTACACCGCACCATTTGCTAATTGGAGGGACACCACCACCTTTAATATGGCTCCGCATCCTCCTCAACCTCATGAATTGCCCGC TTGCTGCAGGGATATCTTGATTAGTTACTCTAGCGAAATGCTGAAATTGGGTGATCTACTCTTGGAACTGTTGTCTGAGGCTCTAGGTTTAACCCCAAAT CATTTGAAAGAAATGGATTGTTCGAATGGGTTATGCGTATTGTGCCATTACCATCCACCTTGTCCTCAACCAGAGCTCACTCTGGGTTCATCCAAGCATC AAGATGATGATTTCATAACAGTGCTTCTACAAGATGACATCGGAGGGCTTCAAGTTCTTCACCTGGATCAATGGGTTGATGTACCTCCCTTGCCAGGGAG TCTGGTGGTCAACATTGGAGACTTGCTTCAGCTTCTGTCGAATGACAAGTTCATAAGCGTCGAGCACCGTGCTCTGGTTAAAAGCAAAGGACCTCGAGTC TCAGTGGCGTCGTTTTTCACTCATGGGTTTTCACCCAATCCTCGAATGTATGGGCCTATCAAGGAGCTCTTGTCAAAAGACAATCCGCCAAAGTACAGGG AAGTCTCGATTCAGGAGTATACTTCCCACATATATGATAACGGCCTTGGCGGATCTTCTGCTCTGCATCATCTTAAGTTATGA
AA sequence Show only first row Show all	>Lus10022197 pacid=23139430 polypeptide=Lus10022197 locus=Lus10022197.g ID=Lus10022197.BGIv1.0 annot-version=v1.0 MKGVSNLDYDRLVELKAFDETKAGVKGLADAGITQLPPFFHIPPHLLDSRPTASDFTFPIIDLQGVLGPNRKQIVDKVRDASSNWGFFQVLNHGIPDSLL DEMKAGVARFYEQDVELKKPFFERDDPTKKIVYNSNFDLYTAPFANWRDTTTFNMAPHPPQPHELPACCRDILISYSSEMLKLGDLLLELLSEALGLTPN HLKEMDCSNGLCVLCHYHPPCPQPELTLGSSKHQDDDFITVLLQDDIGGLQVLHLDQWVDVPPLPGSLVVNIGDLLQLLSNDKFISVEHRALVKSKGPRV SVASFFTHGFSPNPRMYGPIKELLSKDNPPKYREVSIQEYTSHIYDNGLGGSSALHHLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022197 [exp]	0	1
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	3.3	0.8682
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	17.4	0.8177
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	17.9	0.7705
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	18.0	0.8090
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	19.0	0.7932
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	19.9	0.7847
AT2G34050			unknown protein		Lus10020428 [exp]	20.7	0.7273
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	23.0	0.7880
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	27.9	0.7751
AT5G08450			unknown protein		Lus10004299 [exp]	30.9	0.7697

Compare expression of checked genes

Lus10022197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.