Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43500 687 / 0 ATARP9 actin-related protein 9 (.1.2) AT5G43460 67 / 9e-13 HR-like lesion-inducing protein-related (.1) AT1G04340 66 / 3e-12 HR-like lesion-inducing protein-related (.1) AT4G14420 41 / 0.0006 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021206 [exp] 212 / 3e-64 AT5G43500 117 / 6e-23 actin-related protein 9 (.1.2) Lus10021205 [exp] 144 / 1e-39 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 121 / 8e-32 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 49 / 1e-06 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1) Lus10041149 [exp] 49 / 2e-06 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10032484 [exp] 48 / 3e-05 AT1G18450 690 / 0.0 actin-related protein 4 (.1) Lus10042980 [exp] 46 / 8e-05 AT1G18450 578 / 0.0 actin-related protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165000 [exp] 902 / 0 AT5G43500 773 / 0.0 actin-related protein 9 (.1.2) Potri.010G073600 [exp] 902 / 0 AT5G43500 773 / 0.0 actin-related protein 9 (.1.2) Potri.010G073500 [exp] 94 / 5e-22 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.008G165100 [exp] 93 / 9e-22 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 64 / 1e-11 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.008G165200 [exp] 63 / 3e-11 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.010G073400 [exp] 56 / 7e-09 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1) Potri.006G139900 [exp] 48 / 1e-05 AT5G09810 554 / 0.0 actin 7 (.1) Potri.015G053100 [exp] 48 / 2e-05 AT1G18450 682 / 0.0 actin-related protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin CL0131 [flax] [poplar] DoxD-like PF05514 [flax] [poplar] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Lus10022198 pacid=23139506 polypeptide=Lus10022198 locus=Lus10022198.g ID=Lus10022198.BGIv1.0 annot-version=v1.0 ATGACTGTCTGTGTGCATGCATACTTGATTAGGTTCAATGAGTTTGGAGATGATGGTGGCCCTGCTGCCCAAGAGATAATGTCAAAGCTTTCTATGGTTA AGGCTCATCTTGCAACCTCATTTGCAGTCGAAATGCCCGATGTTGATGCTAGGCACGTTGTGGCTTTAAACATTGGCCTCAAGGGTCTGGGTGGCTTCCT CTTTGTATTTGGCACTCCTTTTGGTGCTTATCTCCTGCTCGTCTACTTGGCTGTGAATGCTCCACTCCTGTATGACTTTTACAACTATCGACGGGGTGAG ATTGAGTACTTGATTCTCTTGAATGAATTCTTGCAGAGCGTTGCTCTTTTTGGTGCATTGCTTTTCTTCCTGGGGATGAAGAACCTGATTCCAAGGAGAC AGATGAAGAAGAAGGCTGCTTCCAAAGCCAAAGATTACTTGAAAACCGTGGTTCCGTCCCAACTAGTTGCCGATCGAGGTTCTAATATAGTCGTTATCAA CCCTGGTTCTGCCAACGTTCGAATCGGAGCCGCTCAACAGGATGCTCCCTACTCCATTCCTCACTGCATTGCTCGGCATACCAATCAAACACCCAAGTTG AATGTTCTAGATCAGATGCTAAATTGTCAGGTGACGACTGGTCAGCACATGGAGCGTGAGAAGGCTTATGATGCTATTGCTCCATTCTTGAAGATTCCTT TTTTGGGGGAACAAGTGGGAGTCCCACGAAAGATAGGCCGTGTTGATCATAATCATAATGGTAGGAAGGACGAAAGTCTTGCATGGACTAATGTGTATGA ACAGGATGCGAACTCCAGTTTAGGACCAGAAAGGATGACAAATGAAGAGCAGGCTGGTGAATCCTCAGAGGAACATCAAGATGATGAGTCAAAGCAGCTC CGTTCTACTGAATATAGATACAGACAATTCATTATTGGGGATGAAGCATTAAGAATATCACCTACAGAACCATATTGCTTACGCCGTCCAATTCGCAGAG GTCACTTAAACATTTCTCAGCAGTATCCACTGCAGCAGGTGATTGAGGATCTGCACACTATCTGGGACTGGATTTTGACACAGAAACTTGATGTTCCTCA GTCAGATAGAAACAAGTATTCAGTTGTCCTTGTTCTGTCAGAAAGCTTTGATAATCGAGAAATGAAAGAACTGCTATCTGTAGTATTACGAGATTTGCAC TTCGGCTCGGCAGTAGTACACCAGGAAGGTCTTGCTGCAGTATTTGGAAATGGATTATCAACAGCATGCGTAGTCAATATGGGTGCTCAAGTTACTACGG TTATTTGTATTGAGGATGGGGCAGCATTACCTCACACCGAAAAGACATTACCATTTGGCGGAGAGGATATATCAAGATGTCTACTCTGGACCCAAAGGCG CCATCAGACATGGCCACCAATTCGAACCGACATGTTGACAAAACCTATGGATCTGCTTATGTTAAACAAACTGAAAGAGTCTTATTGTGAGATCAAGGAG GGGGAGCTTGATGTTGTTTCCATAGTTCATTCCTATGAGGACGGCCTGGCACCTGGATCTCATAAGGCTAGGTTAACTGCTCTTAATGTACCTCCTATGG GGCTTTTCTATCCTACGCTTTTGGTTCCAGATGTGTATCCTCCCCCACCTCGTTCTTGGTTTAATAACTACGATGACATGCTGGAAGAGACATGGCATAT AGAATATCCCAGAAGGCCTGACATATCTGACAATATGTATTCTGGCATGAACGTTGGATTACCCATGTGGGACAACTACCCGATATTTGCCTCTAAGCCA AAAAAGGAAGAAAAAGTCGGCCTTGCAGAAGCTATCACCGGTAGCATTCTCTCAAGTGGCCGCATAGAGCTTCAGAGGAAGTTGTTCTGTAGCATACAAC TGATTGGTGGAGTAGCCTTGACCGCTGGTCTCATTGCTGCTGTGGAAGAAAGAGTTCTGCATACAATTCCCCCAAACGAGGCAATCGATACCGTAGAGAT ACTCGGGATCCTCGACTTTGGCCGTGATGCTTGGATTCACAGGGAGGACTGGATTCGCAACGGAATTCACATAAATAGTAACAGAAAGTACAGAGACTCT TACTATCTCCAAGCTCAAGCGATGAGCTACATAAACTCTTGA
AA sequence Show only first row Show all	>Lus10022198 pacid=23139506 polypeptide=Lus10022198 locus=Lus10022198.g ID=Lus10022198.BGIv1.0 annot-version=v1.0 MTVCVHAYLIRFNEFGDDGGPAAQEIMSKLSMVKAHLATSFAVEMPDVDARHVVALNIGLKGLGGFLFVFGTPFGAYLLLVYLAVNAPLLYDFYNYRRGE IEYLILLNEFLQSVALFGALLFFLGMKNLIPRRQMKKKAASKAKDYLKTVVPSQLVADRGSNIVVINPGSANVRIGAAQQDAPYSIPHCIARHTNQTPKL NVLDQMLNCQVTTGQHMEREKAYDAIAPFLKIPFLGEQVGVPRKIGRVDHNHNGRKDESLAWTNVYEQDANSSLGPERMTNEEQAGESSEEHQDDESKQL RSTEYRYRQFIIGDEALRISPTEPYCLRRPIRRGHLNISQQYPLQQVIEDLHTIWDWILTQKLDVPQSDRNKYSVVLVLSESFDNREMKELLSVVLRDLH FGSAVVHQEGLAAVFGNGLSTACVVNMGAQVTTVICIEDGAALPHTEKTLPFGGEDISRCLLWTQRRHQTWPPIRTDMLTKPMDLLMLNKLKESYCEIKE GELDVVSIVHSYEDGLAPGSHKARLTALNVPPMGLFYPTLLVPDVYPPPPRSWFNNYDDMLEETWHIEYPRRPDISDNMYSGMNVGLPMWDNYPIFASKP KKEEKVGLAEAITGSILSSGRIELQRKLFCSIQLIGGVALTAGLIAAVEERVLHTIPPNEAIDTVEILGILDFGRDAWIHREDWIRNGIHINSNRKYRDS YYLQAQAMSYINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10022198 [exp]	0	1
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	3.2	0.9479
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	3.7	0.9545
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10007718 [exp]	4.5	0.9384
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	5.7	0.9350
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	9.7	0.9262
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	9.8	0.9391
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	13.9	0.9366
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	15.4	0.9400
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	18.0	0.9313
AT2G40800			unknown protein		Lus10030504 [exp]	18.0	0.9348

Compare expression of checked genes

Lus10022198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.