Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14450 72 / 3e-17 ATBET12 unknown protein AT1G04330 67 / 1e-15 unknown protein AT3G23170 62 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021208 [exp] 189 / 2e-63 AT4G14450 80 / 2e-20 unknown protein Lus10041157 [exp] 133 / 9e-42 AT4G14450 72 / 3e-17 unknown protein Lus10021878 [exp] 130 / 2e-40 AT4G14450 71 / 6e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G164801 [exp] 119 / 3e-36 AT4G14450 57 / 1e-11 unknown protein Potri.010G073900 [exp] 107 / 1e-31 AT4G14450 56 / 3e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022200 pacid=23139421 polypeptide=Lus10022200 locus=Lus10022200.g ID=Lus10022200.BGIv1.0 annot-version=v1.0 ATGGCAGACAAGCAGAGGAACGGAAGTAGTAAGATCTCCTCCACCTCTACCCCGGCCGCCGGGCAGTCGAGCCGTCTCCAACGGCGGAGACCGGCGTCCT TGCAGATAAATCCGGCGTCTTCTTCCTTCTGGAACGCGGCCATCCCTCTTCTCTCTCCTCTCGAAACCTCCCCCACGGCAATCGATCGGAAGGAGCAGCA GCAACAGCAACATCAGATTCAGAATCAGAAGCGAGGAGGCGGAGGGGAGGCAGATAATAAGCCAATCGTGTTAAAGAAGTGGCAGCATCCTGCTGCGCCC TTCTGCTACGAGCCGGAGAAATTTAAGCCCTCTTTCTTCGTCCCCGTATAG
AA sequence Show only first row Show all	>Lus10022200 pacid=23139421 polypeptide=Lus10022200 locus=Lus10022200.g ID=Lus10022200.BGIv1.0 annot-version=v1.0 MADKQRNGSSKISSTSTPAAGQSSRLQRRRPASLQINPASSSFWNAAIPLLSPLETSPTAIDRKEQQQQQHQIQNQKRGGGGEADNKPIVLKKWQHPAAP FCYEPEKFKPSFFVPV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14450		ATBET12	unknown protein		Lus10022200 [exp]	0	1
AT5G19590			Protein of unknown function, D...		Lus10017733 [exp]	2.0	0.8580
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007954 [exp]	3.9	0.8584
AT2G35200			unknown protein		Lus10036051 [exp]	6.0	0.8124
AT1G16840			unknown protein		Lus10033369 [exp]	7.2	0.7828
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	12.2	0.8319
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	14.1	0.7656
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10017779 [exp]	14.2	0.8001
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	20.1	0.7632
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	22.8	0.7625
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	23.2	0.8192

Compare expression of checked genes

Lus10022200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.