Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23160 652 / 0 Protein of unknown function (DUF668) (.1) AT5G04550 202 / 3e-57 Protein of unknown function (DUF668) (.1) AT5G51670 181 / 2e-50 Protein of unknown function (DUF668) (.1) AT1G34320 104 / 3e-23 Protein of unknown function (DUF668) (.1) AT1G30755 81 / 9e-16 Protein of unknown function (DUF668) (.1) AT5G08660 79 / 5e-15 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021210 [exp] 1086 / 0 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 195 / 2e-55 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 196 / 7e-55 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 149 / 1e-38 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 148 / 2e-38 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 149 / 3e-38 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 140 / 2e-35 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 97 / 9e-21 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 96 / 3e-20 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074000 [exp] 778 / 0 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 768 / 0 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 214 / 2e-61 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 212 / 6e-61 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 196 / 3e-56 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 184 / 1e-50 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 171 / 7e-47 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 99 / 2e-21 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 91 / 4e-19 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 91 / 8e-19 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11961 [flax] [poplar] DUF3475 Domain of unknown function (DUF3475) PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10022201 pacid=23139356 polypeptide=Lus10022201 locus=Lus10022201.g ID=Lus10022201.BGIv1.0 annot-version=v1.0 ATGGTGGCCGAGACTTGGATACTGAAGATGGGTAACCAGGTTAGCAGCAATTTAAAGCACGCATTCCTTCCAGAACCCAACAAGAAAAAACCACCCCACC ACAAAAAGAGGCTTTCTTCCTCTGCAACCGTACCTCCCTCCAAACAAACCATTGGAATCCTCTCCTTCGAGGTAGCCAATGTCATGTCCAAAACCGTCCA CCTCCATAAATCCCTCTCTGATTCCGAGATCTCCAAGCTCAAAGCTGAGATCTTGGGGTCTCCGGGAGTCCGAAACTTGGTCTCCGGCGACGAATCCCGT CTCCTCCAGCTTGCCCTGGCCGAGAAGCTCGACGACCTCAACCGGGTAGCCGCGGTAGTCTCCCGGCTCGGCAAGAAATGTGCCGAGCCGGCTTTACAGG GGTTTGAGCATGTCTATGGGGATTTAACTAGCGGGGAGATTGATGTCAATGAATTAGGGTTTCTGGTTAAGGATATGGATGCGATGAGTTGGAGGATGGA GAGGTATGTTAGCGCCACCGCTAATTTGTACAGTGAAATGGAGGTGTTGAGTGAATTAGAGCAAGCTACTAAGAAGTTTCAGATGAACCAGCATGAGGAG AGTCGGAGGGCCTTTGAACAGAAAGTGATTTGGCAGAAGCAGGATGTCAGGCATCTTAAGGAGGTTTCCATTTGGAACCAGAGTTATGATAAGGTTGTGG AGCTTTTGGTTAGGACTGTTTGTACAATCTACGCTAGGATTTGTGCTGTTTTTGGGGAATCCGTGCTGCACAAGGAGAAAAGTTGTTCTACTTCTTCGTC CCCTTCTAGTTGTAAGGATGAATGCTGGGAATCGGGGCAATTGAAGCGTGGTGGTAGTCGAGGAAGTGACTATGTGCATACCAAGTCTGGTCAGATTGAG CGAGCTGTGGTAAGTGGTAAGCTTAAGCCTCATGTTGTGGATCCGAGGAGGAACGAAATTTCGGTGTTTGAGCCTGGGGATGTCATGTTTCCTTGTGGAA TTAGTCCAGGGAGGCTTTTCATGGAGTGCCTTAGCCTGACGAGCTCCAGTTCCAAATTGGATTACGATGACGAGGGTACCATTGATGATCGGAGTAGTCA CATTTCCAGCTGCAAAAGCACCGCAAAGTGTGGTTTGAGCAAAGGGCTAAGCCGGTTTAGCTCTTCGAGTCTAGCTCAAGGAGAGGCAGCTAGTCTATTT GGTCCGAAGAGCAAATTGACTGTTTATGCTCCTCCCACTACCTTGGGTGGATGTGCTCTGGCATTGCATTATGCGAATGTCATAATCGTAATTGAGAAGC TGCTTCGGTATCCACATTTGGTTGGGGAAGAAGCTAGGGATGATCTGTACCAGATGTTACCTACAAGCTTACGAATGTCGTTGAGGACTAAGCTCAAGTC CTACATGAAGAACTTGGCGATCTACGATGCTCCTCTGGCTCACGATTGGAGAGAAGCAATTGACGGGATACTCAGATGGCTTGCTCCATTGGCACATAAT ATGATCAGGTGGCAGAGTGAGAGGAATGTGGAGCAGCATCAGATTGCAGCGAGGACTAATGTGCTGTTGCTGCAGACGTTGTACTTTGCCGATAGGGAGA GGACGGAGGGAGCCATCAGTGAGCTTCTGGTGGGGTTGAATTACATCTGCAGGTATGAACATCAGCAGAATGCACTGTTGGATTGTGCCAGTAGCTTTGA TTTCGAAGATTGTATGGAGTGGCAGATGCAGTGTCGAGCTGCTTTTCTCAACTGA
AA sequence Show only first row Show all	>Lus10022201 pacid=23139356 polypeptide=Lus10022201 locus=Lus10022201.g ID=Lus10022201.BGIv1.0 annot-version=v1.0 MVAETWILKMGNQVSSNLKHAFLPEPNKKKPPHHKKRLSSSATVPPSKQTIGILSFEVANVMSKTVHLHKSLSDSEISKLKAEILGSPGVRNLVSGDESR LLQLALAEKLDDLNRVAAVVSRLGKKCAEPALQGFEHVYGDLTSGEIDVNELGFLVKDMDAMSWRMERYVSATANLYSEMEVLSELEQATKKFQMNQHEE SRRAFEQKVIWQKQDVRHLKEVSIWNQSYDKVVELLVRTVCTIYARICAVFGESVLHKEKSCSTSSSPSSCKDECWESGQLKRGGSRGSDYVHTKSGQIE RAVVSGKLKPHVVDPRRNEISVFEPGDVMFPCGISPGRLFMECLSLTSSSSKLDYDDEGTIDDRSSHISSCKSTAKCGLSKGLSRFSSSSLAQGEAASLF GPKSKLTVYAPPTTLGGCALALHYANVIIVIEKLLRYPHLVGEEARDDLYQMLPTSLRMSLRTKLKSYMKNLAIYDAPLAHDWREAIDGILRWLAPLAHN MIRWQSERNVEQHQIAARTNVLLLQTLYFADRERTEGAISELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQMQCRAAFLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23160			Protein of unknown function (D...		Lus10022201 [exp]	0	1
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	2.0	0.7162
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	10.6	0.7049
AT2G22760	bHLH	bHLH019	basic helix-loop-helix (bHLH) ...		Lus10006085 [exp]	15.7	0.7025
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	22.9	0.6675
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	24.1	0.6593
AT3G20340			unknown protein		Lus10021518 [exp]	25.7	0.6929
AT4G12840			Protein of unknown function (D...		Lus10036434 [exp]	39.3	0.6455
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	55.9	0.6222
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	57.3	0.6360
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	71.2	0.6162

Compare expression of checked genes

Lus10022201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.