Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46200 165 / 8e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000549 [exp] 367 / 1e-124 AT2G46200 371 / 1e-126 unknown protein Lus10021211 [exp] 261 / 4e-84 AT2G46200 196 / 1e-59 unknown protein Lus10036405 [exp] 41 / 0.0009 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091400 [exp] 224 / 3e-69 AT2G46200 306 / 3e-101 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022202 pacid=23139391 polypeptide=Lus10022202 locus=Lus10022202.g ID=Lus10022202.BGIv1.0 annot-version=v1.0 ATGAATTCAGTTCCTTTCCGCGTACCTCATCCCGGCCAACAAACTTCCCCTTGGATGCTGATGTTACCGCCCAACCCATTACAGTCAAGTGGAGTTTGGA AGAATAGGAATGTTCATGAGCGGCGGAGAGAGCTGCAAGACACTTTGCTGCTTGCACAGGAAATGCAGAAAGAGTTGGAAGGGCTGGAAAAGTTGAAGCC TATTCAAGAATTTGGGAAGACAGGGATATGTGCAGAGAGTGCTTTAATGTTGAAGTTAAGAGCTCAGCTGGAGCTATTACAGTATGGCATGGACGAAGCA ACTCCTTGGGAGGAGAAGGCTGCAGCCATTAGACTCTCTGTAAAATTGCTCAAGTCCAAGAGAAATAAACAATGGAGGAAGAGAAAACGAAAATGCGCTG CAGAAATGTATGCTAAGGTGGTTTTCCCTGGTTTAGCTGAAATTATTTTCTCTTCTTCTTTCAATTCTCAACAGTATATTGATTGGGGAATATGGATGTT TAGGAGCATGAGCGTTTTGTTCAAGCTGATCACGAAGCTAACGAGTGGAGGGCTAGGGAGATTGCCGAGGAAGCTGAATTATATTGATCTCCACTTTGTA ATTGCTTGTGCTGTTGAAAGTATGAACTCAATTGCAAAGCTCAAGGCAAAAGAAGACAGAAAGAAGCTCGAATCTGAACTTGAGCTAGTCTTGATGGTAG AGAAGTTGCAAGAATTGCGTTCCGTGAGGATCCAAAAATTAAAGAAACAAGTTGAGGAGGAGGAGCGCCTGGCCCAGGTTGCTGCCGAGACAAACGCTGC CAACGATGCAATAGCTTCTGCTGAAGAATCAAGGAAAACGATACAGAATCATGGGTCTATCCCAAAGGAAGCAAGAGGTGATGTTAACGAGGATAAACAA AACATAGACCCGGTGGTCGATGAAAAAGGCACTGTAGGCTCTTCGGCAGAAACATTTCCATCTAGAGAAAAGGGACTGGAAAGTCATACTCATGGTGGAG CATTTGGTTCTGCAGCTAATTTACCAATCGAATTCTATGATTATTATCATGGCAGCAATAACGACGTGGGGACGCTTATCGAGGTGAGAAGGACTTGGGA TGCATATATCAGGCCAGGAGGAAGTCGCATACCAGGACACTGGGTTGTGCCACTACCTCCTGCAGATGATGGGACTCCACCATCACGCATCCCTGGGGTC CATCTTCCAGAGGAGCAAACTCATGCAGGACCGAGAGTTGAGATCAACCAAGTTCTTGCACTGTTGTAA
AA sequence Show only first row Show all	>Lus10022202 pacid=23139391 polypeptide=Lus10022202 locus=Lus10022202.g ID=Lus10022202.BGIv1.0 annot-version=v1.0 MNSVPFRVPHPGQQTSPWMLMLPPNPLQSSGVWKNRNVHERRRELQDTLLLAQEMQKELEGLEKLKPIQEFGKTGICAESALMLKLRAQLELLQYGMDEA TPWEEKAAAIRLSVKLLKSKRNKQWRKRKRKCAAEMYAKVVFPGLAEIIFSSSFNSQQYIDWGIWMFRSMSVLFKLITKLTSGGLGRLPRKLNYIDLHFV IACAVESMNSIAKLKAKEDRKKLESELELVLMVEKLQELRSVRIQKLKKQVEEEERLAQVAAETNAANDAIASAEESRKTIQNHGSIPKEARGDVNEDKQ NIDPVVDEKGTVGSSAETFPSREKGLESHTHGGAFGSAANLPIEFYDYYHGSNNDVGTLIEVRRTWDAYIRPGGSRIPGHWVVPLPPADDGTPPSRIPGV HLPEEQTHAGPRVEINQVLALL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46200			unknown protein		Lus10022202 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	11.3	0.7734
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	19.9	0.7497
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	21.1	0.7613
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Lus10035748 [exp]	39.0	0.7376
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	61.6	0.7221
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	63.2	0.7242
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	76.3	0.7205
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	77.1	0.7077
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	78.5	0.7162
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	84.1	0.7183

Compare expression of checked genes

Lus10022202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.