Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23150 845 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 795 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 604 / 0 ERS2 ethylene response sensor 2 (.1) AT1G66340 469 / 6e-155 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 367 / 4e-117 ERS1 ethylene response sensor 1 (.1) AT5G35750 76 / 7e-14 AHK2 histidine kinase 2 (.1) AT1G27320 75 / 1e-13 AHK3 histidine kinase 3 (.1) AT2G01830 72 / 1e-12 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021212 [exp] 1422 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 1227 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 1223 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 872 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 858 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 843 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 839 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10020778 [exp] 465 / 2e-153 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 461 / 4e-152 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074300 [exp] 1185 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 1138 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.013G044100 [exp] 884 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 862 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.001G204200 [exp] 470 / 2e-155 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 466 / 4e-154 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 410 / 1e-133 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.014G164700 [exp] 77 / 3e-14 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 75 / 2e-13 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 74 / 2e-13 AT1G27320 1425 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10022203 pacid=23139481 polypeptide=Lus10022203 locus=Lus10022203.g ID=Lus10022203.BGIv1.0 annot-version=v1.0 ATGTTCAAATCATTAGCTCCTGGGCTGCTGCTGTTGACTTTCCTCCTTTTGGCATCTGTTTCTGCCAACGACAATGGATTCTCAAGATGTAACTGCGACG ACGAGGACAGTTTATGGAGCATAGATACCATCCTGGAATGCCAAAGGGTGGGCGATTTCCTGATCGCCGTTGCGTATTTCTCGATCCCGATCGAGTTGCT CTACTTCATCAGCTGCTCCAACGTCCCATTCAAATGGGTACTTTTCGAATTCATTGCTTTCATTGTTCTGTGTGGGATGACCCACTTGCTCAACGGATGG ACGTATGGCCCTCACAGTTTCCATCTCATGGTTGCTGTCACAGTCTTCAAGATCCTAACCGCTTTGGTCTCCTCTGCCACCGCTATCACTCTCTTCAGCT TGATCCCTTTGCTTCTCAAGGTCAAAGTGAGGGAATTCATGTTAAAGAAGAAAACTTGGGATCTGGGTAGGGAAGTTGGAATGATTATGAAGCAAAGAGA AGCTGGATTGCATGTTCGAATGCTTACTCAGGAGATTAGGAAATCGCTTGACAGGCACACCATATTGTACACGACACTTGTTGAGCTGTCCAAGACGCTT GGTTTGCAGAATTGTGCTGTTTGGATGCCTAATGAGATTAGGACTCAGATGCACTTGACACATGAGCTCCACGGGGGACATTACTCCGATATGGATAGCT GTGTGATACCGACATCTGATCCTGATGTTGCGACGATCAAGGGCAGCGATAGTGTGAACATCCTCGGTTTCGATTCGCCTTTAGCTTCCGCGAGCTATGG CGAGTCTGGTGAGCCGGGTCCGGTGGCTGCGATCCGAATGCCTATGCTTCGTGTTTGCAATTTCAAAGGTGGAACCCCTGAAATGATCCAGGCGTGCTAT GCGATACTCGTATTGGTTCTTCCCGGTGATCAGCCTAGGTCATGGAGCAATCAAGAGCTGGAGATTATCAAAGTAGTGGCTGATCAGGTGGCTGTGGCTC TCTCCCATGCTGCGGTGCTTGAGGAATCGCAGCTTATGAGGGAGAAATTGGAGGAGCAGAATCGAGCATTGCAGCAGGCGAAGATCGACGCGATGATGGC TAGTCAAGCTAGGAATGCTTTCCAGAAGGTAATGAGTGATGGAATGAAGAGGCCGATGCATTCTATTTTGGGATTGGTATCCATGATGCAGGATGGAAGT TTACGCAGCGAGCAGCAGATTCTAGTAGATACGATGATGAAGGCGAGCAATGTGTTATCGGTGTTAATAGATGATGTGATGGAAATCTCGACCAAGGATA GCGGGAGGTTTCGAATGGACACCAAGTCTTTCCGGCTGCATTCCATGATCACAGAAGCAACTTGCCTTGCCAAGTGCTTGTGTATTTACAAAGGCTTTGG TTTTTCAATGGAAGTTGATAGGTCCTTGCCTGATCATGTTGTGGGAGATGAGAGGAGGATCTTTCAGGTGATCTTGCATATGATTGGCAATTTGCTTGAT GGAAATAGTAAGGGTGGATCTGTACTACTTCGGATTGTGGTTGACAATGGAAGCCAGGAGAGGAATGATCAGAGATGGGCGACGTGGAGGCAAAGCCCTT TGTCGGATGGCGAGATATCGATCAGATTCGAAATTGGAATTACCTCTGGCGGTTCTGAATCTGGACCCTCCACATCAGCAATGCAGCTTGGTGGTAGACG GTACACAAGCGAAGGGTTTGAGCAAGGTCTCAGCTTCACAGTATGCAAAAAGCTTGTCCAGATGATGCAAGGCAACATTTGGGTAGTACCGAACAATCAA GGTTTCGTCAAGAACATGGGACTCATCCTACGGTTTCAACTCCGCTCGTCAATCTCATTATCCATCTCCGAGCCAGGAGATTCGTCTGAGCATAATCATC TACCGCACTCAAACTCCTTCTTCCGAGGGTGGCAAGTGGTGTTGGTAGAGTCGGACGATTTGAACAGAAGCGTCACTCGAAGACTGCTCGAGAAGCTAGG TTGCTCGGTGGTCCCTCTATCTTCAGGGTACGAGTGCCTCAGTGCAATAGGCCCAGCCGCTTCTTCCTTCCAAGTAGTGCTGCTCGATCTACAACTGCCA GACCTGGACGGGTTTGAAGTTGCAGCGCAGATCAGGAAGTTCAGGAGCAGGAACTGGCCGCTGATTGTGGCGATGACGTCGAGTGGGGACGACGAATTGT GGGACAAGTGTATGCAGATGGGGATGAATGGTGTGATAAGGAAACCGATTATGCTGCAAGGGATTGCAAATGAGCTAAGGAGAGTGGTGCTGCTCGCAAA CAGAAGTGGTGGTGTAATGTAA
AA sequence Show only first row Show all	>Lus10022203 pacid=23139481 polypeptide=Lus10022203 locus=Lus10022203.g ID=Lus10022203.BGIv1.0 annot-version=v1.0 MFKSLAPGLLLLTFLLLASVSANDNGFSRCNCDDEDSLWSIDTILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLFEFIAFIVLCGMTHLLNGW TYGPHSFHLMVAVTVFKILTALVSSATAITLFSLIPLLLKVKVREFMLKKKTWDLGREVGMIMKQREAGLHVRMLTQEIRKSLDRHTILYTTLVELSKTL GLQNCAVWMPNEIRTQMHLTHELHGGHYSDMDSCVIPTSDPDVATIKGSDSVNILGFDSPLASASYGESGEPGPVAAIRMPMLRVCNFKGGTPEMIQACY AILVLVLPGDQPRSWSNQELEIIKVVADQVAVALSHAAVLEESQLMREKLEEQNRALQQAKIDAMMASQARNAFQKVMSDGMKRPMHSILGLVSMMQDGS LRSEQQILVDTMMKASNVLSVLIDDVMEISTKDSGRFRMDTKSFRLHSMITEATCLAKCLCIYKGFGFSMEVDRSLPDHVVGDERRIFQVILHMIGNLLD GNSKGGSVLLRIVVDNGSQERNDQRWATWRQSPLSDGEISIRFEIGITSGGSESGPSTSAMQLGGRRYTSEGFEQGLSFTVCKKLVQMMQGNIWVVPNNQ GFVKNMGLILRFQLRSSISLSISEPGDSSEHNHLPHSNSFFRGWQVVLVESDDLNRSVTRRLLEKLGCSVVPLSSGYECLSAIGPAASSFQVVLLDLQLP DLDGFEVAAQIRKFRSRNWPLIVAMTSSGDDELWDKCMQMGMNGVIRKPIMLQGIANELRRVVLLANRSGGVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10028734 [exp]	1.4	0.9346
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10016815 [exp]	2.2	0.9307
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10005317 [exp]	2.6	0.9280
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	4.2	0.9339
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	4.6	0.9472
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	6.0	0.9207
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10031530 [exp]	9.6	0.9027
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10013569 [exp]	12.0	0.9285
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	13.6	0.9315
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	16.6	0.8875

Compare expression of checked genes

Lus10022203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.