Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23130 94 / 3e-23 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT4G17810 84 / 1e-19 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 85 / 2e-19 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT5G06070 82 / 1e-18 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 81 / 2e-18 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G09290 64 / 2e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 60 / 2e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 55 / 2e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 50 / 3e-07 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G01860 49 / 5e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021215 [exp] 221 / 2e-70 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021490 [exp] 85 / 2e-19 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10010871 [exp] 85 / 3e-19 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10024362 [exp] 84 / 3e-19 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10004705 [exp] 82 / 7e-19 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10030967 [exp] 82 / 2e-18 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10040083 [exp] 81 / 2e-18 AT4G17810 123 / 8e-35 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10000481 [exp] 72 / 3e-15 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004578 [exp] 72 / 3e-15 AT4G17810 95 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G163900 [exp] 100 / 6e-26 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 89 / 3e-21 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 89 / 3e-21 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 87 / 3e-20 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G199800 [exp] 85 / 2e-19 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089600 [exp] 85 / 3e-19 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.016G101400 [exp] 84 / 4e-19 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.002G041700 [exp] 81 / 1e-18 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.010G074500 [exp] 81 / 2e-18 AT3G23130 73 / 7e-16 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.005G221400 [exp] 77 / 3e-17 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022206 pacid=23139348 polypeptide=Lus10022206 locus=Lus10022206.g ID=Lus10022206.BGIv1.0 annot-version=v1.0 ATGGGATATAATGATTTCTTTGTTTCTTCCTTCCTACTAGGTATAATATTCAAGCCTGCAGTCAGTCAGTCCGATATGGAGAGGCTAGTGATGAGCAGCA GCAGCATGAAGGACCACAGTAACCTCGATGGCCGAAGCAACGCTAGATCACCAGCAGCACCGCCACCACCATCATGGAGCTGCACCACCAACAGCACCAT CACCACTACTAGCCACCACCACCAGCATCAGCATCCGGACTATCTCTCCGGGTTCACATGGCCGCCGAGATCCTACACGTGCACCTTCTGCAAGAGGGAA TTCAGGTCCGCTCAGGCTCTGGGCGGCCACATGAACGTCCACCGGCGTGACCGGGCCCGCTTGAGGCAGTATTCTCCTCCGCCGCTACCACCGCGAGAAT GCCCCATCCTGAACCTGAATGCCAACCCTAACCCTAACCCTAGCTTCTCATCAGCAGCAGCAGCTTCATCTCCTCCTTCTCCTTCTCCAGCTGGCAGGAG ATCATGGGCTGAGGGTAGTGTTGACCATTTGACTAAAGTTGGGACCCGCAAGTCTCTGTTTGGAGCTGAGTTTGACGGTTCCAACAAGTTGAGGAAGAGA GGTGGGGAGATTAATGTAAGCCTGGAGTTGGAGATTGGATCAGTCGTTAACGGCGGCGGCGGTGGCTCTTCCAAAAAAGAGCAGCTTGACTTGGAGCTTC GGTTAGGCATTTGA
AA sequence Show only first row Show all	>Lus10022206 pacid=23139348 polypeptide=Lus10022206 locus=Lus10022206.g ID=Lus10022206.BGIv1.0 annot-version=v1.0 MGYNDFFVSSFLLGIIFKPAVSQSDMERLVMSSSSMKDHSNLDGRSNARSPAAPPPPSWSCTTNSTITTTSHHHQHQHPDYLSGFTWPPRSYTCTFCKRE FRSAQALGGHMNVHRRDRARLRQYSPPPLPPRECPILNLNANPNPNPSFSSAAAASSPPSPSPAGRRSWAEGSVDHLTKVGTRKSLFGAEFDGSNKLRKR GGEINVSLELEIGSVVNGGGGGSSKKEQLDLELRLGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	0	1
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	1.0	0.7988
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	8.3	0.7867
					Lus10039764 [exp]	11.3	0.7634
AT3G04620		DAN1	D NUCLDUO1-ACTIVATEEIC ACID BI...		Lus10005531 [exp]	13.0	0.7282
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10005178 [exp]	15.5	0.7473
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10011303 [exp]	17.3	0.6882
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10026496 [exp]	17.3	0.7976
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	18.5	0.6620
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10043380 [exp]	25.2	0.6173
AT2G46570		LAC6	laccase 6 (.1)		Lus10030235 [exp]	26.0	0.7062

Compare expression of checked genes

Lus10022206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.