Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04300 444 / 2e-138 TRAF-like superfamily protein (.1.2.3.4) AT5G43560 427 / 2e-132 TRAF-like superfamily protein (.1.2) AT5G52330 326 / 6e-102 TRAF-like superfamily protein (.1.2) AT3G11910 108 / 8e-24 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 107 / 2e-23 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58210 84 / 7e-17 TRAF-like family protein (.1) AT3G58250 80 / 7e-16 TRAF-like family protein (.1) AT1G69650 76 / 1e-14 TRAF-like family protein (.1) AT2G42460 72 / 2e-13 TRAF-like family protein (.1.2) AT3G58360 72 / 3e-13 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021218 [exp] 1589 / 0 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10021216 [exp] 1536 / 0 AT1G04300 837 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022208 [exp] 1164 / 0 AT1G04300 424 / 8e-134 TRAF-like superfamily protein (.1.2.3.4) Lus10008949 [exp] 113 / 3e-25 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 111 / 2e-24 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10043456 [exp] 111 / 2e-24 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 109 / 7e-24 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 93 / 6e-21 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 95 / 3e-20 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G075000 [exp] 992 / 0 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 984 / 0 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G012600 [exp] 113 / 3e-25 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 112 / 7e-25 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 110 / 2e-24 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 110 / 3e-24 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.001G130700 [exp] 78 / 4e-15 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 72 / 3e-13 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.018G025600 [exp] 74 / 4e-13 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.006G256400 [exp] 74 / 7e-13 AT2G25320 2377 / 0.0 TRAF-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10022207 pacid=23139456 polypeptide=Lus10022207 locus=Lus10022207.g ID=Lus10022207.BGIv1.0 annot-version=v1.0 ATGGCTCGGAGTGCCAGCGAGGAAGCTGGAGCTGGAAGAACTGCTGACAGGATTTCCAGTGGGCAGCGCTGTCAAGCTGGCGAAACAATGGTTGAATGGC GGTCTTCTGACCAGGTGGTTACTGGGGCTCCATCAACTTCACCCCCTTATTGGGACACTGATGACGAAGATGACGGTGGGCTTAAACCCTCAGAGTTGTA TGGAAAATATACATGGAAGATTGACAAATTTTCACAGATTAACAAAAGGGAACTCCGTAGTAATGTATTTGAGGTTGGCGGCTACAAATGGTACATATTG ATCTACCCCCAAGGTTGTGATGTCTGCAATCATCTCTCTTTGTTTCTCTGCGTTGCCAATCATGAAAAGCTTCTTCCAGGTTGGAGTCATTTTGCCCAGT TCACTATTGCTGTGGTCAATAAAGATCCGAAAAAGTCAAAATACTCTGATACATTACATCGTTTTTGGAAGAAAGAGCATGACTGGGGTTGGAAGAAGTT CATGGAGCTGTCAAAAGTTGGGGACGGATTTTTGGATGCTGCTGACACTCTAATAATAAAGGCACAAGTGCAAGTCATCAGGGAGAAAACCGATCGGCCT TTCCGTTGCCTTGACTGTCAATATAGGAGAGAACTTGTGAGAGTATACCTGAGCAATGTAGAGCAGATCTGTCGGCGCTTTGTGGAGGAGAGACGGGGCA AGCTTGTTAAATTATTAGGGGACAAAAATAGGTGGTCGAGTGGACTGAAGGCTCTCGAGGGACAGGCTAAGAACAAGAAAGGAAAGGTTAAAAGTCATTC TGAAGAAATCCCAGCTCCTATTGTACATGTTGAAAAAGATACATTTGTATTAGTAGATGATGTGCTGCTATTACTAGAGAGGGCTGCTATGGAACCTTTA CCTCCAAAGGATGATAAAGGACCTCAGAATCGTACAAAGGGAAATACATGCTTCATTTGCTCTTTTGTATGTAGCCATAAGATCGAAGTTGCCTACCAGG AAGCTGTTGCTCTGAGGAGGCAAGAGGAGCTAATTCGTGAAGAAGAGGAAGCAGGATTAGCTGGGGTCGAACAGAAGGCTAAGCGTGGGGCAGCTGAAAA GGAAAAGAAATCTAAGAAAAAACAAGCGAAGCAGAAACGCAACAATCGGAAGGGAAAGGAAAAAGGTAAGGAAGAACGCCCTGGTGCTGTAACAGTAGAC AATCATCATGAAGACAACGCTAGCAATGGGAAACAAGTTACCCTAAACGATGAGGTGCAACCTACAGATGAGAAACCTGATATCCCAGAAGATGTTTCTG ATGTGTCTGATTCCATTGATGGTGTTGCTGAAGTTCTCCAGATTGATTCAGAAGACAGAGATGCTAGTACTGTCAACTGGGATACTGATACTTCAGAAGT TCATCTACCCGCTGAAGATTGCAAGAGTGGTGTCAGTGGGTTATCATCAGCAGCAGATGGCACTGCCGAGAAAAGGAGTGTATTTGCTATGGATGATAGT TCGTCGACATGTTCAACTGATTCTTTACCCTCTGTAGTTATGAATGGTTCCTACAAAGGAAGTTCAGTCTCAACCTACCAGTGTGATACATCACCTAACA GGGGGAAGAACCATCGAGGTAAGATGACATCCAATGGGGCTTGGGGTTCTGAAGCTGAAAGTCAGCCCTCTGGCTCTACAACAGGGTCTTGGGATCGTAA TAGTAAGACTGAAAATTGCAAGTCTAATGAATGTGAATTGGAGGCTGCTGCCCATAGCTTTCAAGACATGGCAACAAGGGCTGAGCAGATTAAATGGGAT GAGAAAGTTGCTTTGCCGTTTAAGAAGCCAAGTACCACAAACATTGTTGAATTGGAGAAGCACTCTAGAGAAACGGCAAAATCTGTATTGACCTCTCCAA GTAGTCCTTCGAAAACTCCAGCTGGGACTATTCAAGTTAAACCAGAATTGAAGGTTTCTATCACAGTAGATGCTGCTAAAGTCGAGAACATTTGTTCTCC CTTGCCACAACCGACTGAGAAAGGAGCAGGCAGAGCTCTCACCCAAAATGCTAGTCTACCCAAACCAGAAATCCACATTGCTTCAGCTCCAAAATTTTCC AAAAAGCCAACACAACAGCAAGTCTCTGTTGTTTCAAGGCCATCCAGTGCTCCTCTCGTGCCTGGACCTAGACTGGCTACTCCTGCTGTTTCAATGCCTC CAATGAGCGCCCCAATTTCTCGTTCAGTGAGTGCAACCGGGCGGTTAGGTCCTGAGCCTACCATGACGGCACATAGTTACATTCCCCAGTCCTACAGGAA TGCTATGGTTGGAAACTCTGCTATCCGAACTTCAAGCAGCTCTAGTAGTAATCCCAATTCACCAAATCCGAGGATGAATCTGTCTACAGCACCAACCATG GTATCTCCATATGTGCCTCAGAGCTCTGAAAGAGCTGATATCAATGCTGTACAATCAGGCTATCCATTTTCAATGATGACGAGAGATGTGTTTCAAAATG GACATCAGTGGATGGAGATGGAGAGTCCTCAAAGGGATCCTAGCAGGAGTATGCAGTGTAATTCTTCATCATATTTAAATGAGATTCAGAACCTCGATTT GAATAATCGGGTAGACAGCAGTTTACGGGATCAGTACCCTGCAGAGTTGCCATTTTTGAAATACAGGCGTCAGAATCAAGGTGTTTCAACAGATGAATTC CCACATCTTGATATCATCAATGACTTGCTTGATGATGAACATGTTATTGCAAGGGGTGTTAGGGCAGAAGGCTTCAACTCTTACAGCAATGGTCCTCACT ACTTAAGTAGGCAGTCATCTTTCCCTTGTGATTTAGGAGCGTCTGCTAACTCATCAAGTAGCAGCAGTTCATGCAGTAAGTTTGAGCGGACAAGAAGTTA CCAGGACGAAGTGTACCAGCGAGGGTACAGCCCTTTTGGAGGGCATTATGACCCAATAAGCGACTATGTTCCTCATCTACCTTATGCCAACGGGCAGATG GATAGCTTGATATCTAATCAGTGGCAGTTTCCAACAAGCCCAGATTTTTCATTAGCTGGTATGAGAAATGCAGAGGGTGATGGATCAACATACTTCAGTC CAGATTATCCTACGAATGTGGCTTGTGGTGTGAATGGTTATACGATGTATCGTCCTTCAAATGGGCATTGA
AA sequence Show only first row Show all	>Lus10022207 pacid=23139456 polypeptide=Lus10022207 locus=Lus10022207.g ID=Lus10022207.BGIv1.0 annot-version=v1.0 MARSASEEAGAGRTADRISSGQRCQAGETMVEWRSSDQVVTGAPSTSPPYWDTDDEDDGGLKPSELYGKYTWKIDKFSQINKRELRSNVFEVGGYKWYIL IYPQGCDVCNHLSLFLCVANHEKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVGDGFLDAADTLIIKAQVQVIREKTDRP FRCLDCQYRRELVRVYLSNVEQICRRFVEERRGKLVKLLGDKNRWSSGLKALEGQAKNKKGKVKSHSEEIPAPIVHVEKDTFVLVDDVLLLLERAAMEPL PPKDDKGPQNRTKGNTCFICSFVCSHKIEVAYQEAVALRRQEELIREEEEAGLAGVEQKAKRGAAEKEKKSKKKQAKQKRNNRKGKEKGKEERPGAVTVD NHHEDNASNGKQVTLNDEVQPTDEKPDIPEDVSDVSDSIDGVAEVLQIDSEDRDASTVNWDTDTSEVHLPAEDCKSGVSGLSSAADGTAEKRSVFAMDDS SSTCSTDSLPSVVMNGSYKGSSVSTYQCDTSPNRGKNHRGKMTSNGAWGSEAESQPSGSTTGSWDRNSKTENCKSNECELEAAAHSFQDMATRAEQIKWD EKVALPFKKPSTTNIVELEKHSRETAKSVLTSPSSPSKTPAGTIQVKPELKVSITVDAAKVENICSPLPQPTEKGAGRALTQNASLPKPEIHIASAPKFS KKPTQQQVSVVSRPSSAPLVPGPRLATPAVSMPPMSAPISRSVSATGRLGPEPTMTAHSYIPQSYRNAMVGNSAIRTSSSSSSNPNSPNPRMNLSTAPTM VSPYVPQSSERADINAVQSGYPFSMMTRDVFQNGHQWMEMESPQRDPSRSMQCNSSSYLNEIQNLDLNNRVDSSLRDQYPAELPFLKYRRQNQGVSTDEF PHLDIINDLLDDEHVIARGVRAEGFNSYSNGPHYLSRQSSFPCDLGASANSSSSSSSCSKFERTRSYQDEVYQRGYSPFGGHYDPISDYVPHLPYANGQM DSLISNQWQFPTSPDFSLAGMRNAEGDGSTYFSPDYPTNVACGVNGYTMYRPSNGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	1.0	0.9465
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	1.4	0.9322
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	2.4	0.9212
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	3.5	0.9145
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	5.3	0.9086
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	5.3	0.9197
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	6.9	0.8647
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	7.3	0.8898
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	7.7	0.9020
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	8.7	0.8812

Compare expression of checked genes

Lus10022207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.