Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04300 187 / 8e-49 TRAF-like superfamily protein (.1.2.3.4) AT5G43560 167 / 2e-42 TRAF-like superfamily protein (.1.2) AT5G52330 112 / 1e-26 TRAF-like superfamily protein (.1.2) AT4G16045 69 / 3e-12 TRAF-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021218 [exp] 1225 / 0 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10021216 [exp] 1216 / 0 AT1G04300 837 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022207 [exp] 1202 / 0 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G075000 [exp] 519 / 3e-168 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G163300 [exp] 509 / 2e-164 AT1G04300 846 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022208 pacid=23139387 polypeptide=Lus10022208 locus=Lus10022208.g ID=Lus10022208.BGIv1.0 annot-version=v1.0 ATGGATCAGAATGCTCAACGTCGTATGTCTAGGGAGAAGATGGATGTTATTTTAAAAGTAGTTGTTAAGCATTTCTTTATAGAGAAGGAAGTTACATCGA CGTTGGTGATGGATTCCTTGTATAGTGGACTGAAGGCTCTCGAGGGACAGGCTAAGAACAAGAAAGGAAAGGTTAAAAGTCATTCTGAAGAAATCCCAGC TCCTATTGTACATGTTGAAAAAGATACATTTGTATTAGTAGATGATGTGCTGCTATTACTAGAGAGGGCTGCTATGGAACCTTTACCTCCAAAGGATGAT AAAGGACCTCAGAATCGTACAAAGGGAAATACATGCTTCATTTGCTCTTTTGTATGTAGCCATAAGATCGAAGTTGCCTACCAGGAAGCTGTTGCTCTGA GGAGGCAAGAGGAGCTAATTCGTGAAGAAGAGGAAGCAGGATTAGCTGGGGTCGAACAGAAGGCTAAGCGTGGGGCAGCTGAAAAGGAAAAGAAATCTAA GAAAAAACAAGCGAAGCAGAAACGCAACAATCGGAAGGGAAAGGAAAAAGGTAAGGAAGAACGCCCTGGTGCGAAGCAGAAACGCAACAATCGGAAGGGA AAGGAAAAAGGTAAGGAAGAACGGCCTGGTGCTGCAACAGTAGACAATCATCATGAAGACAACGCTAGCAATGGGAAACAAGTTACCCTAAACGATGAGG TGCAACCTACAGATGAGAAACCTGATATCCCAGAAGATGTTTCTGATGTGTCTGATTCCATTGATGGTGTTGCTGAAGTTCTCCAGCTTGATTCAGAAGA CAGAGATGCTAGTACTGTCAATTGGGATACTGATACTTCAGAAGTTCATCTACCCGCTGATGATTGCAGCAGTGGTGTCAGTGGGTTATCATCAGTAGCA AATGGCACTGCCGAGAAAAAGAGTGTATCTGCTATGGATGATAGTTCGTCGACATGTTCAACTGATTCTTTGCCCTCCGTAGTTATGAATGGTTCCTACA AAGGAAGTTCAGTCCCGACCTACCAGTGTGATAAATCACCTAACAGGGGGAAAAACCATCGAGGTAAGATGACAGCCACTGGGGCTTGGGGTTCTGAAGC CGAAAGTCAGCCCTCTGGCTCTACAGTAGGCTCTTGGGATCTTAACAGTAAGACTGGAAATAGCAAGTCTAATGGATGTGAATTTGAGGCGGCTGCTCAT AGCTTGCAAGACACGGCAACAAGGGCTGAGCAGCATATGATTAAAAGGGATGAGAAAGTTGCTTCGCCGTCTAAGAAGCCAAGTACCACAAACATTGTTG AATTGGAGAAACACTCTAGAGAAACGGCTAAATCTGTATTGATCTCTCCAAGAAGTCCTTCAAAAACTCCAGCCGGGACTATTCAAGTTAAACCAGAATT GAAGCTTTCTATTACGGTAGATGCTGCTAAAGTCCAGAACATTTGTTCTCCCTTGCCACAACTGTCTGAGAAAGGAGCAGACAGTGCCCTCGCCCAAAAT GCTAGTCTACCCAAACCAGAAATCCGCAACGCTTCAGCTCCAAAATTTTCTGAAAAGCCAACACAACCGCAAGTTCCTGTTGTTTCAAGGCCATCCAGTG CTCCTCTCGTGCCTGGACCTAGACCGGCTACTCCTGCTGTTTCAATACCTCTAATGAGCGCCCCAATTTCTCGTTCAGTGAGTGCAACCGGGCGGTTAGG TTCTGATCCTACCTTGACGTCACATAGTTATATTCCCCGGTCCTATAGGAATGCTATAGTTGGAAACTCTGTTGTCCGACCTTCAAGCAGCTCTAGTAGT GATCCCAATTCATCAAATCTGAGGATGAATCTGTCTACAGCACCAACCATGGTATCTCCATATGTGCCGCAGAGCTCTGAAAGAGCTGATCTCAACACTG TACAATCAGGCTATCCATTTTCAATGATGACGAGAGATGTGTTTCAAAATGGACATCAGTGGATGGAGACGAAGAGTCCTCAAAGGGATCCTATCAGGAG TATGCAGTGTAGTAATTCTTCATCGTTTTTAAATGAGATTCAGAACCTCGATTTGCATAATCGGGTACACAGCAGTTCACGGGATCAGTACCCTGCAGAG TTGCCATCTTCGATATACAGGCGTCAGAATCAAGGTGTTTCAACAGATGAATTTCCACATCTTGATATCATCAATGACTTGCTTGATGATGAACATGTTA TTTCGAGGGGTGTTAGGGCAGAAGGCTTGAACTCTTACAGCAATGGTCCTCACTACTTAAGTAGGCAGTCATCTTTCCCTTGTGATTTAGGAGCGTCTGC TAACTCATCAAGTAGCAGCAGTTCATGCAGTAAGTTTGAGCGGACAAGAAGTTACCAGGACAAAGTGTACCGGCGAGGGTACAGCTCTTTTGGAGGGCAT TACGACCCAATAATCGACTACGTTCCTCATCTACCTTATGCCAACGGGCAGATGGATAGCTTGATATCTAATCAGTGGCAGTTTCCAACAAGCCCAGATT TTTCATTAGCTGGTATCAGAAATGCAGAGGGTGATGGGTCAACATACTTCAGTCCAGATTATCCTACGAATGTGGCTTATGGTGTGAATGGTTATACGAT GTATCGTCCTTCAAATGGGCATTGA
AA sequence Show only first row Show all	>Lus10022208 pacid=23139387 polypeptide=Lus10022208 locus=Lus10022208.g ID=Lus10022208.BGIv1.0 annot-version=v1.0 MDQNAQRRMSREKMDVILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQAKNKKGKVKSHSEEIPAPIVHVEKDTFVLVDDVLLLLERAAMEPLPPKDD KGPQNRTKGNTCFICSFVCSHKIEVAYQEAVALRRQEELIREEEEAGLAGVEQKAKRGAAEKEKKSKKKQAKQKRNNRKGKEKGKEERPGAKQKRNNRKG KEKGKEERPGAATVDNHHEDNASNGKQVTLNDEVQPTDEKPDIPEDVSDVSDSIDGVAEVLQLDSEDRDASTVNWDTDTSEVHLPADDCSSGVSGLSSVA NGTAEKKSVSAMDDSSSTCSTDSLPSVVMNGSYKGSSVPTYQCDKSPNRGKNHRGKMTATGAWGSEAESQPSGSTVGSWDLNSKTGNSKSNGCEFEAAAH SLQDTATRAEQHMIKRDEKVASPSKKPSTTNIVELEKHSRETAKSVLISPRSPSKTPAGTIQVKPELKLSITVDAAKVQNICSPLPQLSEKGADSALAQN ASLPKPEIRNASAPKFSEKPTQPQVPVVSRPSSAPLVPGPRPATPAVSIPLMSAPISRSVSATGRLGSDPTLTSHSYIPRSYRNAIVGNSVVRPSSSSSS DPNSSNLRMNLSTAPTMVSPYVPQSSERADLNTVQSGYPFSMMTRDVFQNGHQWMETKSPQRDPIRSMQCSNSSSFLNEIQNLDLHNRVHSSSRDQYPAE LPSSIYRRQNQGVSTDEFPHLDIINDLLDDEHVISRGVRAEGLNSYSNGPHYLSRQSSFPCDLGASANSSSSSSSCSKFERTRSYQDKVYRRGYSSFGGH YDPIIDYVPHLPYANGQMDSLISNQWQFPTSPDFSLAGIRNAEGDGSTYFSPDYPTNVAYGVNGYTMYRPSNGH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	0	1
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	1.7	0.9301
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	2.4	0.9212
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	3.9	0.9146
AT4G30790			unknown protein		Lus10007701 [exp]	4.4	0.8861
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	5.3	0.9167
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10041409 [exp]	10.4	0.8864
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	15.0	0.9007
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	15.2	0.8977
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10027998 [exp]	15.8	0.8996
AT5G22040			unknown protein		Lus10008373 [exp]	17.3	0.8936

Compare expression of checked genes

Lus10022208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.