Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56290 655 / 0 CwfJ-like family protein (.1) AT5G56900 79 / 3e-15 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021219 [exp] 1135 / 0 AT1G56290 739 / 0.0 CwfJ-like family protein (.1) Lus10008172 [exp] 474 / 5e-161 AT1G56290 509 / 3e-175 CwfJ-like family protein (.1) Lus10027982 [exp] 144 / 3e-35 AT2G48060 1580 / 0.0 unknown protein Lus10021589 [exp] 76 / 7e-14 AT5G56900 803 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415900 [exp] 778 / 0 AT1G56290 768 / 0.0 CwfJ-like family protein (.1) Potri.006G152100 [exp] 88 / 9e-18 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04676 [flax] [poplar] CwfJ_C_2 Protein similar to CwfJ C-terminus 2 CL0265 [flax] [poplar] HIT PF04677 [flax] [poplar] CwfJ_C_1 Protein similar to CwfJ C-terminus 1
Representative CDS sequence Show only first row Show all	>Lus10022209 pacid=23139500 polypeptide=Lus10022209 locus=Lus10022209.g ID=Lus10022209.BGIv1.0 annot-version=v1.0 ATGCTTTCTGGAGTCAAATTCATTCCTCGGGACCAAGTTGACGAAGCTGGAGGTAAAGACGGAAGCAATTCTTCCAAGAAGAGGAGGAAGGACGATAAGA GGGAAAAGAGAGGGAAGAAGAGCTCACGATGGAAGAGTAGTTCTGATGATGATTTTGAGATAATTAAGGAAAGTTCGAGGAGAAAGAAGAAGTGGTACTC CTCTGACGATTATTCCTCTTCGTCCTCGTCTGAAGATGAGGATGGAAAAGGAAAAGCTAGGAAGAGAAAAGGAGTTAAAGGAAGCAGGAAAGTTGATCAC TCGCCAGATGGTCGTAGAGAATCCGACTCCATCAAGGAAATGGAAGTTACTAGGAAGGAAATGGGATTAGATTGGATGCTTAGACCTTCAGACGCTTCTG AGAAAAGGGTAGCTCCCAAGGTTGATGAGCAGCCAGTGGAACCTGCTGAGGAGGTGAAAAGGGCAAATCCCAGAGAATTAAATCCCTATCTGAAGGATGA TGGAAGTGGTTACCCTGATGAGGCGGAGGAAAAACGTGGCGGAGACAAGCTCCCTAGATCTGCAGTTGTTGGAGATGGAGGTGCAAGCTGGAGGCTGAAA GCCCTAAAGCGTGCAGAAGAACAAGCAGCTAGAGATGGCCGGAAACTGGACGAGGTGGTGGGAGAAAGGTGGGGCTCTCTTGGTCAATTGGCTGCTTCTG CTGCATCTCACAGGGCAGCCCCTTCTCGTGCTCATCTACATGCCATTAGAAGTAGACAAATGAGGCAGAAAGAGGAACAAGGACCTGCCACAAATGGTCG ACACGGGGAAGATATTGAAAAGACTCCTGACAGAAGTTACTTGAAGGATGTTTCTGTTCGCCATCCTGAGATGAAAGCCCCTAAAGTCCGTGATTCCTTA TCTTGGGGAAAGCAGAGAATTCCAAAGCTGTCTACAAGCGATGCAAGCATTATATCCAGTGCAGCCTCGAGCCTAAATAAGTTCGCTAATGATGGGAACT TTATGAACCAAGTCCTTGGTCAGACTAGTGTTTTGGGTAGTTCAAATGCAAAACTAGATGTCGTATCTAAGGTTGATTTGTCCGACAGGAGCCAACCTTC CGAATGTACTATAGTGATTACAGAAGGAATGACTGCAAATCAATTGGCAGCTAAGGCCTTGCAACTTCGATTAAAAGGCAAGCATGAAGAAGCTGATAAC CTAATGAAAGAGTCTGAAAAGCTGAAGGAGAAGCAGAATGTTGGAGAGCAAATGGTTCAACCACAAACTGCTGGAAGTGCTAACAGGTATGTTCAGCATC ACTCCAACACGCAAAAGAAGGATGATGACAATGCGGACAAAAACTTAGCTCGAACCATAATGCACAATAAACAATATAGCTTATCGGGCCGTGCTGATGA TGAGTACGATTTTGAGGATGGGCCAAGAAAGAAATCACGAAAGAAGGAGAAAGACAATGATCGGAAATCTGAGAACATCAGTCTTGGTAGGAGCATCATG ACACAACAAGACCGCTGTCTGTTTTGCTTTGAGAACCCAAATAGACCAAAGCATTTAGTTTTGTCGATAGCAAACTTCACCTATTTGATGTTGCCTCAAA GGAAGCCAGTTGTACCAGGTCATTGCTGCATCGTACCTTTACAGCATGAATCATCTACAAGGACTGTAGACAATAACGCATGGGAGGAGATTCGGAATTT CAAGAAATGCCTGATAATGATGTTTGCAAAGCAAGACAAAGAGGTAGTGTTTCTTGAAACGGTAATGGGTTTGGCCAAACAACGTCGACATTGTTTAGTT GAGTGCATCCCTTTGCCACAAGATATTGCCAAAGAAGCCCCTCTTTATTTCAAAAAGGCAATCGACGAGGCTGAAGACGAATGGAGTCAGCACAATGCAA AAAAGCTGATCGACACGAGCATAAAGGGGCTGCGGGGATCTATCCCCAAGGACTTTCCATATTTCCATGTTGAATTTGGATTGAAGAAAGGGTTCGCCCA TGTTATCGACGATGAGAGCCAGTTTAATAGCAGCCTCGGCCTTAATGTCATAAGAGGGATGATGCAGCTACCCGATGAAGATATGTATCGACGAAGGAGA CAAGATTCTGGAGAAGGACAGAAGCTGGCAGTTGCTGAGTTTGCGCGGGATTGGCAACCTTTCGATTGGACTAAACAGCTATGA
AA sequence Show only first row Show all	>Lus10022209 pacid=23139500 polypeptide=Lus10022209 locus=Lus10022209.g ID=Lus10022209.BGIv1.0 annot-version=v1.0 MLSGVKFIPRDQVDEAGGKDGSNSSKKRRKDDKREKRGKKSSRWKSSSDDDFEIIKESSRRKKKWYSSDDYSSSSSSEDEDGKGKARKRKGVKGSRKVDH SPDGRRESDSIKEMEVTRKEMGLDWMLRPSDASEKRVAPKVDEQPVEPAEEVKRANPRELNPYLKDDGSGYPDEAEEKRGGDKLPRSAVVGDGGASWRLK ALKRAEEQAARDGRKLDEVVGERWGSLGQLAASAASHRAAPSRAHLHAIRSRQMRQKEEQGPATNGRHGEDIEKTPDRSYLKDVSVRHPEMKAPKVRDSL SWGKQRIPKLSTSDASIISSAASSLNKFANDGNFMNQVLGQTSVLGSSNAKLDVVSKVDLSDRSQPSECTIVITEGMTANQLAAKALQLRLKGKHEEADN LMKESEKLKEKQNVGEQMVQPQTAGSANRYVQHHSNTQKKDDDNADKNLARTIMHNKQYSLSGRADDEYDFEDGPRKKSRKKEKDNDRKSENISLGRSIM TQQDRCLFCFENPNRPKHLVLSIANFTYLMLPQRKPVVPGHCCIVPLQHESSTRTVDNNAWEEIRNFKKCLIMMFAKQDKEVVFLETVMGLAKQRRHCLV ECIPLPQDIAKEAPLYFKKAIDEAEDEWSQHNAKKLIDTSIKGLRGSIPKDFPYFHVEFGLKKGFAHVIDDESQFNSSLGLNVIRGMMQLPDEDMYRRRR QDSGEGQKLAVAEFARDWQPFDWTKQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	0	1
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	1.0	0.9052
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10042209 [exp]	2.4	0.8650
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	3.7	0.8543
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10017342 [exp]	4.6	0.8390
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	5.7	0.8508
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	7.3	0.8523
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	8.5	0.8550
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	9.4	0.8219
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10004024 [exp]	11.1	0.7863
AT5G38720			unknown protein		Lus10008877 [exp]	11.3	0.8529

Compare expression of checked genes

Lus10022209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.