Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23100 279 / 1e-94 XRCC4 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2) AT1G61410 102 / 3e-27 DNA double-strand break repair and VJ recombination XRCC4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021220 [exp] 409 / 8e-146 AT3G23100 296 / 3e-101 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G075900 [exp] 323 / 4e-112 AT3G23100 310 / 8e-107 homolog of human DNA ligase iv-binding protein XRCC4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06632 [flax] [poplar] XRCC4 DNA double-strand break repair and V(D)J recombination protein XRCC4
Representative CDS sequence Show only first row Show all	>Lus10022210 pacid=23139465 polypeptide=Lus10022210 locus=Lus10022210.g ID=Lus10022210.BGIv1.0 annot-version=v1.0 ATGGATACGACGGCGGCGACGAGGAGGCACACATGCTTGAAGCTCGAGGTTTCCGACGCTACGAGCGAACCGGTATTCGTCAAAGGAACTTGGTTCGAGA CTCACTTCGACCTCTCTGTAGCGGACGGCCTTCACTCTTGGGTTTGCTACGCTACGGAAGACGAGGTTAAAGAGAGAGCGGCGCAGTGGGATCAATCGAT TACCGAGTACATTCAATTGGCTGAGAATCACCTAGGGTTTCAAATCCCTGGCTCGGTCTACAGGTTCGACGATGTCGGCGATGGTTGTAAACGATTATCA TGGACCTTTGAAAAAGAAGGGATGACGCTACAATGGAGATGGAAGTTCCAGCCATCGCCTGACAGTAAGAAGACTACAGCAAGGATCTTGGATTTCCTTA TGGACGCAAATATAAGGCTCAGTGAAGAAGTTGTTAGAAAGACGCGGTCATTTGAGCAGATGAAAGGGGAAGCTGAGAAATGCCTGGCGCAAAGCGAGAG GTATTGCAGTGAGAAAGTGGAGTTTGAGTCTGCAATCTATGCAAAGTTCCTTGCAGTTCTGAACTCGAAAAAGCGGAAAATTAGAGAGCTTCGAGATCAG CTCTCCAAGAAGCAACCACCAGAACGAGAAGAAGACACTGATGAGGACGAAGAAGAAAAGGGAGAATCTACAGACAAAACTGAAAGCTTCAATGAAAGTG ACGATGCAAGTAAGGAAGAAGCTCACGGGACAGCAACAGCAGCTTCATCGTCAAGTGGGAAGGGAAGGAGCAGGGGAAGAAAGAGAAGCACTCTTAATTA G
AA sequence Show only first row Show all	>Lus10022210 pacid=23139465 polypeptide=Lus10022210 locus=Lus10022210.g ID=Lus10022210.BGIv1.0 annot-version=v1.0 MDTTAATRRHTCLKLEVSDATSEPVFVKGTWFETHFDLSVADGLHSWVCYATEDEVKERAAQWDQSITEYIQLAENHLGFQIPGSVYRFDDVGDGCKRLS WTFEKEGMTLQWRWKFQPSPDSKKTTARILDFLMDANIRLSEEVVRKTRSFEQMKGEAEKCLAQSERYCSEKVEFESAIYAKFLAVLNSKKRKIRELRDQ LSKKQPPEREEDTDEDEEEKGESTDKTESFNESDDASKEEAHGTATAASSSSGKGRSRGRKRSTLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	0	1
AT2G26470			unknown protein		Lus10038230 [exp]	1.7	0.8836
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	2.0	0.9014
AT1G26750			unknown protein		Lus10031376 [exp]	2.0	0.8816
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	3.7	0.9020
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	3.9	0.8767
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10019423 [exp]	4.7	0.8386
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	7.0	0.8684
AT5G12230		MED19A	unknown protein		Lus10017449 [exp]	7.3	0.8317
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	8.0	0.8680
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	8.5	0.8484

Compare expression of checked genes

Lus10022210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.