Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43600 543 / 0 ATAAH-2, UAH ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) AT4G20070 118 / 8e-29 ATAAH allantoate amidohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021221 [exp] 573 / 0 AT5G43600 607 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Lus10038372 [exp] 112 / 4e-27 AT4G20070 706 / 0.0 allantoate amidohydrolase (.1) Lus10036233 [exp] 105 / 2e-24 AT4G20070 697 / 0.0 allantoate amidohydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076100 [exp] 556 / 0 AT5G43600 680 / 0.0 ARABIDOPSIS THALIANA ALLANTOATE AMIDOHYDROLASE 2, ureidoglycolate amidohydrolase (.1) Potri.001G160100 [exp] 111 / 1e-26 AT4G20070 729 / 0.0 allantoate amidohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10022211 pacid=23139415 polypeptide=Lus10022211 locus=Lus10022211.g ID=Lus10022211.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCAGAACTTCATCCTACAAGCCATTTCACCTTTCTTCTGCTAGTCTGCTTAATCAGCTGCTCAATCTCAACACTAGCAAATGAAGCCGACA CTATCAAAACCATGGAGGATTTCTCTGGCTACCCACTTCACGAGACAATCAATCCCTTCGGTTCCAGATCACTTTCAGTTGACGGCGAAAGCCTGCAGAG ACAGATTGATGAGCTCTCGACCTTCTCGGATACACCGGCACCATCGGTCACTAGGGTTCTTTATACTGACAAGGATGTCTTGGCTCGCAGGTACGTTAAG AATTTGATGGTACTTTCTGGCCTCTCTGTTAGAGAAGATGCCGTGGGAAATATCTTTGGCCGCTGGGATGGGAACGAGCCAGGGCTCCCAGCTGTGGCAA CCGGTTCTCACATTGATGCCATTCCATACTCTGGAAAGTATGATGGAGTTGTTGGTGTCTTAGGTGCAATCGAAGCCATAAATGTATTGAAGAGGTCAGG GTTCCAACCAAAGAGGTCATTAGAAGTTATCCTATTCACATCAGAAGAACCAACAAGATTTGGGATCAGCTGCTTGGGAAGCCGACTCTTGGCTGGGAGT AGCGCTCTGGCTGAAGCTTTGAAGACAACAACAGTAGATGGTCAAAATATATCATTTGTAGAGGCTGCTAGATCTGCTGGTTATATGAAAGATGGGGATG ACTTATCCAGTGTTTTCCTAGACAATAGAAATTATTCTGCCTTCCTGGAACTTCATATAGAGCAGGGGCCGACTCTAGAGGCAGAAGGTTTGTCCATCGG TATAGTGACTGCAATAGCAGCCCCAGCTAGCATCAAGGTCGATTTTGAAGGGAATGGAGGCCATGCCGGTGCTGTTTTGATGCCAAACCGAAATGATGCT GGACTTGCAGCTGCTGAGTTGGCATTAGCTGTTGAGAAACATGTACTAGATTCTGGCTCAATTGATACCGTTGGTACAGTAGGTATTCTAGATCTTCACC CTGGTGCAATCAACAGTATCCCAAGCAAGTCACACCTAGAAATAGATACCAGGGATATTGACGAAAAACGAAGAAATGAAGTGATAAAAAAGATTCATGC ATCTGCAATTGCAATAGCCAAAAAACGTAGCGTGACGTTGTCAGAATTCAAAATAGTGAACCAAGACCCACCAGCTCTTTCAGATAAATCTGTAATCGCG GCTATGGAAGACGCATCAAAGGAGTTGAACTTAACACTCATAAGATGA
AA sequence Show only first row Show all	>Lus10022211 pacid=23139415 polypeptide=Lus10022211 locus=Lus10022211.g ID=Lus10022211.BGIv1.0 annot-version=v1.0 MASPELHPTSHFTFLLLVCLISCSISTLANEADTIKTMEDFSGYPLHETINPFGSRSLSVDGESLQRQIDELSTFSDTPAPSVTRVLYTDKDVLARRYVK NLMVLSGLSVREDAVGNIFGRWDGNEPGLPAVATGSHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGFQPKRSLEVILFTSEEPTRFGISCLGSRLLAGS SALAEALKTTTVDGQNISFVEAARSAGYMKDGDDLSSVFLDNRNYSAFLELHIEQGPTLEAEGLSIGIVTAIAAPASIKVDFEGNGGHAGAVLMPNRNDA GLAAAELALAVEKHVLDSGSIDTVGTVGILDLHPGAINSIPSKSHLEIDTRDIDEKRRNEVIKKIHASAIAIAKKRSVTLSEFKIVNQDPPALSDKSVIA AMEDASKELNLTLIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	0	1
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	5.7	0.7828
AT1G32120			unknown protein		Lus10011779 [exp]	6.5	0.7668
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	7.5	0.7607
AT1G19230			Riboflavin synthase-like super...		Lus10034890 [exp]	12.8	0.7856
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Lus10013413 [exp]	15.4	0.7771
AT5G47540			Mo25 family protein (.1)		Lus10027342 [exp]	23.0	0.7573
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10033836 [exp]	28.4	0.7737
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	34.2	0.7384
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	38.9	0.7569
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	39.0	0.7616

Compare expression of checked genes

Lus10022211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.