Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29250 107 / 5e-30 Alba DNA/RNA-binding protein (.1) AT2G34160 107 / 6e-30 Alba DNA/RNA-binding protein (.1) AT3G04620 105 / 9e-29 DAN1 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021222 [exp] 291 / 5e-102 AT2G34160 75 / 1e-17 Alba DNA/RNA-binding protein (.1) Lus10005531 [exp] 110 / 6e-31 AT3G04620 194 / 2e-64 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10006564 [exp] 110 / 9e-31 AT3G04620 189 / 2e-62 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Lus10019423 [exp] 108 / 2e-30 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10043279 [exp] 108 / 2e-30 AT2G34160 208 / 1e-70 Alba DNA/RNA-binding protein (.1) Lus10002901 [exp] 98 / 3e-26 AT2G34160 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Lus10002027 [exp] 98 / 4e-26 AT2G34160 193 / 6e-65 Alba DNA/RNA-binding protein (.1) Lus10019424 [exp] 52 / 8e-08 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042900 [exp] 114 / 3e-32 AT3G04620 179 / 2e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1) Potri.018G029300 [exp] 109 / 9e-31 AT1G29250 180 / 1e-59 Alba DNA/RNA-binding protein (.1) Potri.006G252000 [exp] 108 / 3e-30 AT1G29250 164 / 2e-53 Alba DNA/RNA-binding protein (.1) Potri.005G056000 [exp] 108 / 3e-30 AT3G04620 177 / 8e-58 D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1, Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10022212 pacid=23139359 polypeptide=Lus10022212 locus=Lus10022212.g ID=Lus10022212.BGIv1.0 annot-version=v1.0 ATGGAAGGTCTGGCGGTTATTCTTCCACAGCAGGATTCCGATAGTCAGATTCATGGTGGCGCCACGGAGTACGAGGCCAATAACGGAGGCATGACGCTCA TCTCCCCCGCCGCTGCCGCCGCGACAGTCCAAGAGGTCTCCGGCGATCCATCAATCGTCAAGACTGACGAAGTCGTTCCAACTGTTTCTGCTGATGTCGC TGGAGAAAGTCAGGAGAAGAAGAAGGCAAACAAGAGGAGGGAGCATCCGATTAAAGTGTCCAACAGCAAGAACCCCTTCGTCTTCTATCTCAATCTCGCC AAGAGGCACATCAAGCAGCACAACCACGTAGAGCTCTCTGCTCTTGGAATGGCTATTCCCACTGTGGTTACGATTGCCGAGAATCTGAAACGCATTGGAC TGGGTGTTGAGAAAAGTATCAAGATGTCTAGCGTTGAAAGCATGGACAGTGACACTGGGCGCGTAATTCAGAAGGCTAAGATTGAGATTCTGATGGAGAA GGCTGAGAAACCCGAGGAACCCACTAGCTATGCGCCTATTACCATCTCCAAGGCTGCATCTTTGCTGGCGGTGAAGAGCATCTGA
AA sequence Show only first row Show all	>Lus10022212 pacid=23139359 polypeptide=Lus10022212 locus=Lus10022212.g ID=Lus10022212.BGIv1.0 annot-version=v1.0 MEGLAVILPQQDSDSQIHGGATEYEANNGGMTLISPAAAAATVQEVSGDPSIVKTDEVVPTVSADVAGESQEKKKANKRREHPIKVSNSKNPFVFYLNLA KRHIKQHNHVELSALGMAIPTVVTIAENLKRIGLGVEKSIKMSSVESMDSDTGRVIQKAKIEILMEKAEKPEEPTSYAPITISKAASLLAVKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10022212 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10024668 [exp]	1.0	0.8120
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	7.7	0.6905
AT5G61670			unknown protein		Lus10016713 [exp]	11.3	0.7935
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	12.3	0.7587
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	14.1	0.7524
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	19.9	0.7889
AT4G26240			unknown protein		Lus10012919 [exp]	23.2	0.7413
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	23.8	0.7545
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	24.8	0.7774
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	24.9	0.7720

Compare expression of checked genes

Lus10022212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.