Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 157 / 4e-45 WDL1 WVD2-like 1 (.1.2.3) AT1G54460 152 / 2e-42 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 133 / 6e-37 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 120 / 3e-30 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 120 / 8e-30 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 116 / 8e-29 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 91 / 9e-20 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 46 / 3e-05 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021223 [exp] 661 / 0 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10006563 [exp] 141 / 1e-38 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10005533 [exp] 140 / 3e-38 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 136 / 8e-37 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 135 / 3e-36 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10000016 [exp] 124 / 1e-33 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002915 [exp] 123 / 2e-31 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 120 / 1e-29 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 120 / 2e-29 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162800 [exp] 350 / 1e-118 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 344 / 4e-116 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.013G042800 [exp] 175 / 5e-51 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.005G055900 [exp] 161 / 2e-45 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 129 / 4e-33 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 120 / 9e-30 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 117 / 4e-29 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 116 / 2e-28 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 88 / 2e-18 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 76 / 2e-14 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10022213 pacid=23139438 polypeptide=Lus10022213 locus=Lus10022213.g ID=Lus10022213.BGIv1.0 annot-version=v1.0 ATGAGGATAGACATTATGGAAATCAGCCTGGACAAGCAGCATGATTGTGAAATTGCTCACCTGAATGGAACTCCCCATGATCTAGATCATCCTTCTATCC CCAATCATGACGTAGCACTTGATTCCTACGAGGGAGTCAGTGTGGACTCTGAACAACAGAGTGATGAAGGGAGCACTGAGTCAAAGGACTATGAAGTGAA AGAATGCACAACTGAAACTATGATTGGGAGTACTGAAATTTCCATTGCTTACCAAAGTAAGGAGGATCAGTCTGCAGCAAATTCAAACTTTGAGGCTGGT TTGGAGGAGAAATTCAAATCAGAAACCAAGGCATCAAGGGATGAGAACAAGTCACATAGTTCACCTAAGAAACTTGCAAGCAAGTCTGGAGTTGCTCGAG CGAAGTACACCGTTCCTAGACCATTTGCCCTAGCTACTGAAAAGCGTGCATCATCCGGACCTCGTCCTTCTGCAACAGGCGCTAAAGCTGTTGTGAATAA ACAATCTAAAGGAAACAGAGTGCTCCAACCAAATACGTTAAAACAGAATCAGGACATTGACGTCAACTTGAAAGTGTTAGGTGCTGTACATGATACATCT AGCATAACCTGTTGGTATCATTTGATCAAAGTTGATCGTGATGTATTGCTCTGTGTTGAAATGCAGCCTCTTTCAGTAGCAAGAAGGCCACTGCAACCGA ACAACAAGAAGCATCCTGGTGAAGAAGATTCTTGTTCTGTCACTTCCTTCACAGGAACTTCTGTACAGAAAACGAAGACAAAATCAGTTATTGCATCACC TCCGACATTCAGATGCACTCAACGAGCCGAGAAGCGCAAGGAGTTTTACTCAAAATTAGAGGAAAAACATCAAGCTCTGGAGTCTGAGAAGACCCAAAAT GAAGCCAGGACAAAGGAAGAAATGGAGGCAGCTATCAAGCAATTGAGAAAGAGTTTAACGTTCAAGGCCAACCCAATGCCAAGTTTCTACCATGAGGGTC CACCACCAAAGATCGAGCTTAAAAAGGTGGCACCAACTCGTGCAAAATCACCAAAGTTGGGTAGAAATAAGAGCACTGGTGTTGAGACAAAGACTCCATC CCAGACCAAAGCAGTTCCCAATCAGGAAAGTCATCTAGGCCGTTCCGAAGAAGGCGAAGACAATCCTCTGGAAGAACCAAGTCGAGCTATTCCATTGGAG GCGAATCGAAACAACATGGCAATCGTCATTTGA
AA sequence Show only first row Show all	>Lus10022213 pacid=23139438 polypeptide=Lus10022213 locus=Lus10022213.g ID=Lus10022213.BGIv1.0 annot-version=v1.0 MRIDIMEISLDKQHDCEIAHLNGTPHDLDHPSIPNHDVALDSYEGVSVDSEQQSDEGSTESKDYEVKECTTETMIGSTEISIAYQSKEDQSAANSNFEAG LEEKFKSETKASRDENKSHSSPKKLASKSGVARAKYTVPRPFALATEKRASSGPRPSATGAKAVVNKQSKGNRVLQPNTLKQNQDIDVNLKVLGAVHDTS SITCWYHLIKVDRDVLLCVEMQPLSVARRPLQPNNKKHPGEEDSCSVTSFTGTSVQKTKTKSVIASPPTFRCTQRAEKRKEFYSKLEEKHQALESEKTQN EARTKEEMEAAIKQLRKSLTFKANPMPSFYHEGPPPKIELKKVAPTRAKSPKLGRNKSTGVETKTPSQTKAVPNQESHLGRSEEGEDNPLEEPSRAIPLE ANRNNMAIVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	0	1
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	5.1	0.8336
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041043 [exp]	7.3	0.8336
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	8.6	0.8103
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	8.8	0.8085
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	13.0	0.8800
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10004095 [exp]	13.0	0.8051
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	15.0	0.8625
AT2G27430			ARM repeat superfamily protein...		Lus10013918 [exp]	18.7	0.8604
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	19.4	0.8370
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	19.4	0.8580

Compare expression of checked genes

Lus10022213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.